Literature DB >> 18230733

Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure.

Jikui Song1, Lian-Wang Guo, Hakim Muradov, Nikolai O Artemyev, Arnold E Ruoho, John L Markley.   

Abstract

The retinal phosphodiesterase (PDE6) inhibitory gamma-subunit (PDEgamma) plays a central role in vertebrate phototransduction through alternate interactions with the catalytic alphabeta-subunits of PDE6 and the alpha-subunit of transducin (alpha(t)). Detailed structural analysis of PDEgamma has been hampered by its intrinsic disorder. We present here the NMR solution structure of PDEgamma, which reveals a loose fold with transient structural features resembling those seen previously in the x-ray structure of PDEgamma(46-87) when bound to alpha(t) in the transition-state complex. NMR mapping of the interaction between PDEgamma(46-87) and the chimeric PDE5/6 catalytic domain confirmed that C-terminal residues 74-87 of PDEgamma are involved in the association and demonstrated that its W70 indole group, which is critical for subsequent binding to alpha(t), is left free at this stage. These results indicate that the interaction between PDEgamma and alpha(t) during the phototransduction cascade involves the selection of preconfigured transient conformations.

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Year:  2008        PMID: 18230733      PMCID: PMC2234174          DOI: 10.1073/pnas.0709558105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  Identification of the gamma subunit-interacting residues on photoreceptor cGMP phosphodiesterase, PDE6alpha '.

Authors:  A E Granovsky; N O Artemyev
Journal:  J Biol Chem       Date:  2000-12-29       Impact factor: 5.157

2.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

3.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

4.  The inhibitory gamma subunit of the type 6 retinal cGMP phosphodiesterase functions to link c-Src and G-protein-coupled receptor kinase 2 in a signaling unit that regulates p42/p44 mitogen-activated protein kinase by epidermal growth factor.

Authors:  Kah Fei Wan; Balwinder S Sambi; Rothwelle Tate; Catherine Waters; Nigel J Pyne
Journal:  J Biol Chem       Date:  2003-03-06       Impact factor: 5.157

5.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Asymmetric interaction between rod cyclic GMP phosphodiesterase gamma subunits and alphabeta subunits.

Authors:  Lian-Wang Guo; Jennifer E Grant; Abdol R Hajipour; Hakim Muradov; Marty Arbabian; Nikolai O Artemyev; Arnold E Ruoho
Journal:  J Biol Chem       Date:  2005-01-24       Impact factor: 5.157

8.  Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure.

Authors:  Joseph A Marsh; Chris Neale; Fernando E Jack; Wing-Yiu Choy; Anna Y Lee; Karin A Crowhurst; Julie D Forman-Kay
Journal:  J Mol Biol       Date:  2007-01-20       Impact factor: 5.469

9.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

10.  Retinal degeneration in mice lacking the gamma subunit of the rod cGMP phosphodiesterase.

Authors:  S H Tsang; P Gouras; C K Yamashita; H Kjeldbye; J Fisher; D B Farber; S P Goff
Journal:  Science       Date:  1996-05-17       Impact factor: 47.728

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  46 in total

1.  Characterization of conformational changes and protein-protein interactions of rod photoreceptor phosphodiesterase (PDE6).

Authors:  Suzanne L Matte; Thomas M Laue; Rick H Cote
Journal:  J Biol Chem       Date:  2012-04-18       Impact factor: 5.157

2.  Complementary interactions of the rod PDE6 inhibitory subunit with the catalytic subunits and transducin.

Authors:  Lian-Wang Guo; Abdol R Hajipour; Arnold E Ruoho
Journal:  J Biol Chem       Date:  2010-03-15       Impact factor: 5.157

3.  PEP-19, an intrinsically disordered regulator of calmodulin signaling.

Authors:  Quinn K Kleerekoper; John A Putkey
Journal:  J Biol Chem       Date:  2008-12-23       Impact factor: 5.157

Review 4.  The retinal cGMP phosphodiesterase gamma-subunit - a chameleon.

Authors:  Lian-Wang Guo; Arnold E Ruoho
Journal:  Curr Protein Pept Sci       Date:  2008-12       Impact factor: 3.272

5.  The structure of the GAF A domain from phosphodiesterase 6C reveals determinants of cGMP binding, a conserved binding surface, and a large cGMP-dependent conformational change.

Authors:  Sergio E Martinez; Clemens C Heikaus; Rachel E Klevit; Joseph A Beavo
Journal:  J Biol Chem       Date:  2008-07-09       Impact factor: 5.157

6.  Identification of fibril-like tertiary contacts in soluble monomeric α-synuclein.

Authors:  Santiago Esteban-Martín; Jordi Silvestre-Ryan; Carlos W Bertoncini; Xavier Salvatella
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

7.  Direct allosteric regulation between the GAF domain and catalytic domain of photoreceptor phosphodiesterase PDE6.

Authors:  Xiu-Jun Zhang; Karyn B Cahill; Arye Elfenbein; Vadim Y Arshavsky; Rick H Cote
Journal:  J Biol Chem       Date:  2008-09-08       Impact factor: 5.157

8.  Structural basis of phosphodiesterase 6 inhibition by the C-terminal region of the gamma-subunit.

Authors:  Brandy Barren; Lokesh Gakhar; Hakim Muradov; Kimberly K Boyd; S Ramaswamy; Nikolai O Artemyev
Journal:  EMBO J       Date:  2009-10-01       Impact factor: 11.598

9.  Structural requirements of the photoreceptor phosphodiesterase gamma-subunit for inhibition of rod PDE6 holoenzyme and for its activation by transducin.

Authors:  Xiu-Jun Zhang; Nikolai P Skiba; Rick H Cote
Journal:  J Biol Chem       Date:  2009-11-30       Impact factor: 5.157

Review 10.  Cyclic nucleotide binding GAF domains from phosphodiesterases: structural and mechanistic insights.

Authors:  Clemens C Heikaus; Jayvardhan Pandit; Rachel E Klevit
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

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