Literature DB >> 18227144

Predictions of hepatic disposition properties using a mechanistically realistic, physiologically based model.

Li Yan1, Shahab Sheihk-Bahaei, Sunwoo Park, Glen E P Ropella, C Anthony Hunt.   

Abstract

Quantitative mappings were established between drug physicochemical properties (PCPs) and parameter values of a physiologically based, mechanistically realistic, in silico liver (ISL). The ISL plugs together autonomous software objects that represent hepatic components at different scales and levels of detail. Microarchitectural features are represented separately from the mechanisms that influence drug metabolism. The same ISL has been validated against liver perfusion data for sucrose and four cationic drugs: antipyrine, atenolol, labetalol, and diltiazem. Parameters sensitive to drug-specific PCPs were tuned so that ISL outflow profiles from a single ISL matched in situ perfused rat liver outflow profiles of all five compounds. Quantitative relationships were then established between the four sets of drug PCPs and the corresponding four sets of PCP-sensitive, ISL parameter values; those relationships were used to predict PCP-sensitive, ISL parameter values for prazosin and propranolol given only their PCPs. Relationships were established using three different methods: 1) a simple linear correlation method, 2) the fuzzy c-means algorithm, and 3) a simple artificial neural network. Each relationship was used separately to predict ISL parameter values for prazosin and propranolol, given their PCPs. Those values were applied in the ISL used earlier to predict the hepatic disposition details for each drug. Although we had only sparse data available, all predicted disposition profiles were judged reasonable (within a factor of 2 of referent profile data). The order of precision, based on a similarity measure, was 3 > 2 > 1.

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Year:  2008        PMID: 18227144     DOI: 10.1124/dmd.107.019067

Source DB:  PubMed          Journal:  Drug Metab Dispos        ISSN: 0090-9556            Impact factor:   3.922


  12 in total

Review 1.  At the biological modeling and simulation frontier.

Authors:  C Anthony Hunt; Glen E P Ropella; Tai Ning Lam; Jonathan Tang; Sean H J Kim; Jesse A Engelberg; Shahab Sheikh-Bahaei
Journal:  Pharm Res       Date:  2009-09-09       Impact factor: 4.200

2.  Tissue-level modeling of xenobiotic metabolism in liver: An emerging tool for enabling clinical translational research.

Authors:  Marianthi G Lerapetritou; Panos G Georgopoulos; Charles M Roth; Loannis P Androulakis
Journal:  Clin Transl Sci       Date:  2009-06       Impact factor: 4.689

3.  Computational experiments reveal plausible mechanisms for changing patterns of hepatic zonation of xenobiotic clearance and hepatotoxicity.

Authors:  Shahab Sheikh-Bahaei; Jacquelyn J Maher; C Anthony Hunt
Journal:  J Theor Biol       Date:  2010-06-10       Impact factor: 2.691

4.  Individualized, discrete event, simulations provide insight into inter- and intra-subject variability of extended-release, drug products.

Authors:  Sean H J Kim; Andre J Jackson; Rim Hur; C Anthony Hunt
Journal:  Theor Biol Med Model       Date:  2012-08-31       Impact factor: 2.432

5.  Cloud computing and validation of expandable in silico livers.

Authors:  Glen E P Ropella; C Anthony Hunt
Journal:  BMC Syst Biol       Date:  2010-12-03

Review 6.  Relational grounding facilitates development of scientifically useful multiscale models.

Authors:  C Anthony Hunt; Glen E P Ropella; Tai ning Lam; Andrew D Gewitz
Journal:  Theor Biol Med Model       Date:  2011-09-27       Impact factor: 2.432

7.  Toward modular biological models: defining analog modules based on referent physiological mechanisms.

Authors:  Brenden K Petersen; Glen E P Ropella; C Anthony Hunt
Journal:  BMC Syst Biol       Date:  2014-08-16

8.  Competing Mechanistic Hypotheses of Acetaminophen-Induced Hepatotoxicity Challenged by Virtual Experiments.

Authors:  Andrew K Smith; Brenden K Petersen; Glen E P Ropella; Ryan C Kennedy; Neil Kaplowitz; Murad Ookhtens; C Anthony Hunt
Journal:  PLoS Comput Biol       Date:  2016-12-16       Impact factor: 4.475

Review 9.  Agent-based modeling: a systematic assessment of use cases and requirements for enhancing pharmaceutical research and development productivity.

Authors:  C Anthony Hunt; Ryan C Kennedy; Sean H J Kim; Glen E P Ropella
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2013-06-04

10.  Virtual Experiments Enable Exploring and Challenging Explanatory Mechanisms of Immune-Mediated P450 Down-Regulation.

Authors:  Brenden K Petersen; Glen E P Ropella; C Anthony Hunt
Journal:  PLoS One       Date:  2016-05-26       Impact factor: 3.240

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