Literature DB >> 20541559

Computational experiments reveal plausible mechanisms for changing patterns of hepatic zonation of xenobiotic clearance and hepatotoxicity.

Shahab Sheikh-Bahaei1, Jacquelyn J Maher, C Anthony Hunt.   

Abstract

No concrete, causal, mechanistic theory is available to explain how different hepatic zonation patterns of P450 isozyme levels and hepatotoxicity emerge following dosing with different compounds. We used the synthetic method of modeling and simulation to discover, explore, and experimentally challenge concrete mechanisms that show how and why biomimetic zonation patterns can emerge and change within agent-based analogues, expecting that those mechanisms may have counterparts in rats. Mobile objects map to compounds. One analogue represents a cross-section through a lobule. It is comprised of 460 identical, quasi-autonomous functional units called sinusoidal segments (SSs). SSs detect and respond to compound-generated response signals and the local level of an endogenous gradient. Each SS adapts by using those signals to adjust (or not) the probability that it will clear a detected compound during the next simulation cycle. The adjustment decision is based on the value of a biomimetic algorithm that is based on an assumed, evolution imposed, genetic mandate that normal hepatocytes resist increasing the cost of their actions. The algorithm estimates the long-term, discounted cost to a given SS of continuing to use its current clearance effort. Upon compound exposure, lobular analogues developed a variety of clearance and hepatotoxicity patterns that were strikingly similar to those reported in the literature. A degree of quantitative validation was achieved against data on hepatic zonation of CYP1A2 mRNA expression caused by three different doses of TCDD (2,3,7,8-tetracholorodibenzo-p-dioxone). Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20541559      PMCID: PMC4126406          DOI: 10.1016/j.jtbi.2010.06.011

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  37 in total

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2.  [Wnt/beta-catenin pathway and liver metabolic zonation: a new player for an old concept].

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Authors:  M E Andersen; R B Conolly
Journal:  Hum Exp Toxicol       Date:  1998-12       Impact factor: 2.903

Review 4.  Zonation of cytochrome P450 expression, drug metabolism and toxicity in liver.

Authors:  K O Lindros
Journal:  Gen Pharmacol       Date:  1997-02

5.  A mechanistic model for the development and maintenance of portocentral gradients in gene expression in the liver.

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Review 6.  Zonation of hepatic cytochrome P-450 expression and regulation.

Authors:  T Oinonen; K O Lindros
Journal:  Biochem J       Date:  1998-01-01       Impact factor: 3.857

7.  Induction and localization of cytochrome P450 1B1 (CYP1B1) protein in the livers of TCDD-treated rats: detection using polyclonal antibodies raised to histidine-tagged fusion proteins produced and purified from bacteria.

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Journal:  Carcinogenesis       Date:  1998-03       Impact factor: 4.944

8.  Zonal gene expression in murine liver: lessons from tumors.

Authors:  Stephan Hailfinger; Maike Jaworski; Albert Braeuning; Albrecht Buchmann; Michael Schwarz
Journal:  Hepatology       Date:  2006-03       Impact factor: 17.425

9.  Pretranslational induction of cytochrome P4501A enzymes by beta-naphthoflavone and 3-methylcholanthrene occurs in different liver zones.

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Journal:  Hepatology       Date:  2006-04       Impact factor: 17.425

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1.  Zonation of hepatic fat accumulation: insights from mathematical modelling of nutrient gradients and fatty acid uptake.

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2.  Individualized, discrete event, simulations provide insight into inter- and intra-subject variability of extended-release, drug products.

Authors:  Sean H J Kim; Andre J Jackson; Rim Hur; C Anthony Hunt
Journal:  Theor Biol Med Model       Date:  2012-08-31       Impact factor: 2.432

3.  Zonation related function and ubiquitination regulation in human hepatocellular carcinoma cells in dynamic vs. static culture conditions.

Authors:  Shu Cheng; Jean-Matthieu Prot; Eric Leclerc; Frédéric Y Bois
Journal:  BMC Genomics       Date:  2012-02-01       Impact factor: 3.969

Review 4.  Relational grounding facilitates development of scientifically useful multiscale models.

Authors:  C Anthony Hunt; Glen E P Ropella; Tai ning Lam; Andrew D Gewitz
Journal:  Theor Biol Med Model       Date:  2011-09-27       Impact factor: 2.432

5.  A Computational Model of Hepatic Energy Metabolism: Understanding Zonated Damage and Steatosis in NAFLD.

Authors:  William B Ashworth; Nathan A Davies; I David L Bogle
Journal:  PLoS Comput Biol       Date:  2016-09-15       Impact factor: 4.475

Review 6.  Agent-based modeling: a systematic assessment of use cases and requirements for enhancing pharmaceutical research and development productivity.

Authors:  C Anthony Hunt; Ryan C Kennedy; Sean H J Kim; Glen E P Ropella
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2013-06-04
  6 in total

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