Literature DB >> 18213526

An in depth analysis of the concept of "polyspecificity" assumed to characterize TCR/BCR recognition.

Melvin Cohn1.   

Abstract

A workshop group developed the concept of a "polyspecific" TCR/BCR in the framework of today's consensus model. They argue that the individual TCR/BCR combining site is composed of a packet of specificities randomly plucked from the repertoire, hence it is "polyspecific." This essay analyzes the conclusions of the workshop and suggests an alternative. "Polyspecificity" must be dissected into its two component parts, specificity and degeneracy. The TCR and the BCR must be treated differently because the TCR recognizes allele-specifically the MHC-encoded restricting element (R) that serves as the platform presenting peptide (P). Only the anti-P paratope of the TCR behaves analogously to the BCR paratope. The two paratopes are selected to recognize a shape-determinant referred to as an epitope or ligand. The paratope is functionally unispecific in recognition, not polyspecific, with respect to shape; it is degenerate in recognition with respect to chemistry. The recognized shape-determinant can be the product of many chemically different substances, peptide, carbohydrate, lipid, steroid, nucleic acid, etc. Such a degenerate set is functionally treated by the paratope as one shape/epitope/ligand and, in no sense, can a paratope recognizing such a degenerate set be described as "polyspecific." Degeneracy and specificity are concepts that must be distinguished. The two positions are analyzed in this essay, the experiments used to support the view that the paratope of the TCR/BCR is polyspecific, are reinterpreted, and an alternative framework with its accompanying nomenclature, is presented.

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Year:  2008        PMID: 18213526      PMCID: PMC2892925          DOI: 10.1007/s12026-007-8003-z

Source DB:  PubMed          Journal:  Immunol Res        ISSN: 0257-277X            Impact factor:   2.829


  50 in total

Review 1.  The immunoglobulin kappa gene families of human and mouse: a cottage industry approach.

Authors:  H G Zachau
Journal:  Biol Chem       Date:  2000 Sep-Oct       Impact factor: 3.915

Review 2.  Polyspecificity of T cell and B cell receptor recognition.

Authors:  Kai W Wucherpfennig; Paul M Allen; Franco Celada; Irun R Cohen; Rob De Boer; K Christopher Garcia; Byron Goldstein; Ralph Greenspan; David Hafler; Philip Hodgkin; Erik S Huseby; David C Krakauer; David Nemazee; Alan S Perelson; Clemencia Pinilla; Roland K Strong; Eli E Sercarz
Journal:  Semin Immunol       Date:  2007-03-29       Impact factor: 11.130

3.  A new concept of immune specificity emerges from a consideration of the self-nonself discrimination.

Authors:  M Cohn
Journal:  Cell Immunol       Date:  1997-11-01       Impact factor: 4.868

4.  Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen.

Authors:  K C Garcia; M Degano; L R Pease; M Huang; P A Peterson; L Teyton; I A Wilson
Journal:  Science       Date:  1998-02-20       Impact factor: 47.728

5.  The E-T (elephant-tadpole) paradox necessitates the concept of a unit of B-cell function: the protection.

Authors:  R E Langman; M Cohn
Journal:  Mol Immunol       Date:  1987-07       Impact factor: 4.407

6.  Negative selection imparts peptide specificity to the mature T cell repertoire.

Authors:  Eric S Huseby; Frances Crawford; Janice White; John Kappler; Philippa Marrack
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-22       Impact factor: 11.205

7.  Receptor revision of immunoglobulin heavy chain variable region genes in normal human B lymphocytes.

Authors:  P C Wilson; K Wilson; Y J Liu; J Banchereau; V Pascual; J D Capra
Journal:  J Exp Med       Date:  2000-06-05       Impact factor: 14.307

8.  B cells are exquisitely sensitive to central tolerance and receptor editing induced by ultralow affinity, membrane-bound antigen.

Authors:  J Lang; M Jackson; L Teyton; A Brunmark; K Kane; D Nemazee
Journal:  J Exp Med       Date:  1996-11-01       Impact factor: 14.307

9.  B lymphocytes may escape tolerance by revising their antigen receptors.

Authors:  M Z Radic; J Erikson; S Litwin; M Weigert
Journal:  J Exp Med       Date:  1993-04-01       Impact factor: 14.307

10.  The complete nucleotide sequence of the human immunoglobulin heavy chain variable region locus.

Authors:  F Matsuda; K Ishii; P Bourvagnet; K i Kuma; H Hayashida; T Miyata; T Honjo
Journal:  J Exp Med       Date:  1998-12-07       Impact factor: 14.307

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  18 in total

1.  Ten experiments that would make a difference in understanding immune mechanisms.

Authors:  Melvin Cohn
Journal:  Cell Mol Life Sci       Date:  2011-11-01       Impact factor: 9.261

2.  What does the T-cell receptor recognize when it docks on an MHC-encoded restricting element?

Authors:  Melvin Cohn
Journal:  Mol Immunol       Date:  2008-04-03       Impact factor: 4.407

Review 3.  A stepwise model of polyreactivity of the T cell antigen-receptor (TCR): its impact on the self-nonself discrimination and on related observations (receptor editing, anergy, dual receptor cells).

Authors:  Melvin Cohn
Journal:  Cell Mol Life Sci       Date:  2013-12-14       Impact factor: 9.261

4.  Epitope-specificity of recombinant antibodies reveals promiscuous peptide-binding properties.

Authors:  Niclas Olsson; Stefan Wallin; Peter James; Carl A K Borrebaeck; Christer Wingren
Journal:  Protein Sci       Date:  2012-10-25       Impact factor: 6.725

5.  Epitope-specific in vivo protection against cytomegalovirus disease by CD8 T cells in the murine model of preemptive immunotherapy.

Authors:  Verena Böhm; Jürgen Podlech; Doris Thomas; Petra Deegen; Marcus-Folker Pahl-Seibert; Niels A W Lemmermann; Natascha K A Grzimek; Silke A Oehrlein-Karpi; Matthias J Reddehase; Rafaela Holtappels
Journal:  Med Microbiol Immunol       Date:  2008-03-14       Impact factor: 3.402

6.  Network, degeneracy and bow tie. Integrating paradigms and architectures to grasp the complexity of the immune system.

Authors:  Paolo Tieri; Andrea Grignolio; Alexey Zaikin; Michele Mishto; Daniel Remondini; Gastone C Castellani; Claudio Franceschi
Journal:  Theor Biol Med Model       Date:  2010-08-11       Impact factor: 2.432

7.  A rationalized set of default postulates that permit a coherent description of the immune system amenable to computer modeling.

Authors:  M Cohn
Journal:  Scand J Immunol       Date:  2008-10       Impact factor: 3.487

Review 8.  Multiple sclerosis: molecular mechanisms and therapeutic opportunities.

Authors:  Djordje Miljković; Ivan Spasojević
Journal:  Antioxid Redox Signal       Date:  2013-04-22       Impact factor: 8.401

9.  A hypothesis accounting for the paradoxical expression of the D gene segment in the BCR and the TCR.

Authors:  Melvin Cohn
Journal:  Eur J Immunol       Date:  2008-07       Impact factor: 5.532

10.  The discussion with Jacques Miller: illustrating the limitations of pure empiricism.

Authors:  Melvin Cohn
Journal:  Immunol Cell Biol       Date:  2009-05-12       Impact factor: 5.126

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