Literature DB >> 18210369

Automated technologies and novel techniques to accelerate protein crystallography for structural genomics.

Babu A Manjasetty1, Andrew P Turnbull, Santosh Panjikar, Konrad Büssow, Mark R Chance.   

Abstract

The sequence infrastructure that has arisen through large-scale genomic projects dedicated to protein analysis, has provided a wealth of information and brought together scientists and institutions from all over the world. As a consequence, the development of novel technologies and methodologies in proteomics research is helping to unravel the biochemical and physiological mechanisms of complex multivariate diseases at both a functional and molecular level. In the late sixties, when X-ray crystallography had just been established, the idea of determining protein structure on an almost universal basis was akin to an impossible dream or a miracle. Yet only forty years after, automated protein structure determination platforms have been established. The widespread use of robotics in protein crystallography has had a huge impact at every stage of the pipeline from protein cloning, over-expression, purification, crystallization, data collection, structure solution, refinement, validation and data management- all of which have become more or less automated with minimal human intervention necessary. Here, recent advances in protein crystal structure analysis in the context of structural genomics will be discussed. In addition, this review aims to give an overview of recent developments in high throughput instrumentation, and technologies and strategies to accelerate protein structure/function analysis.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18210369     DOI: 10.1002/pmic.200700687

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  15 in total

Review 1.  From laptop to benchtop to bedside: structure-based drug design on protein targets.

Authors:  Lu Chen; John K Morrow; Hoang T Tran; Sharangdhar S Phatak; Lei Du-Cuny; Shuxing Zhang
Journal:  Curr Pharm Des       Date:  2012       Impact factor: 3.116

2.  Enabling IMAC purification of low abundance recombinant proteins from E. coli lysates.

Authors:  Audur Magnusdottir; Ida Johansson; Lars-Göran Dahlgren; Pär Nordlund; Helena Berglund
Journal:  Nat Methods       Date:  2009-07       Impact factor: 28.547

3.  Facilitating protein crystal cryoprotection in thick-walled plastic capillaries by high-pressure cryocooling.

Authors:  Yi-Fan Chen; Mark W Tate; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2009-04-28       Impact factor: 3.304

Review 4.  XPA: A key scaffold for human nucleotide excision repair.

Authors:  Norie Sugitani; Robert M Sivley; Kelly E Perry; John A Capra; Walter J Chazin
Journal:  DNA Repair (Amst)       Date:  2016-05-20

5.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

6.  Getting a grip on complexes.

Authors:  Yan Nie; Cristina Viola; Christoph Bieniossek; Simon Trowitzsch; Lakshmi Sumitra Vijay-Achandran; Maxime Chaillet; Frederic Garzoni; Imre Berger
Journal:  Curr Genomics       Date:  2009-12       Impact factor: 2.236

7.  To automate or not to automate: this is the question.

Authors:  M Cymborowski; M Klimecka; M Chruszcz; M D Zimmerman; I A Shumilin; D Borek; K Lazarski; A Joachimiak; Z Otwinowski; W Anderson; W Minor
Journal:  J Struct Funct Genomics       Date:  2010-06-06

8.  EasyModeller: A graphical interface to MODELLER.

Authors:  Bhusan K Kuntal; Polamarasetty Aparoy; Pallu Reddanna
Journal:  BMC Res Notes       Date:  2010-08-16

9.  ProteoPlex: stability optimization of macromolecular complexes by sparse-matrix screening of chemical space.

Authors:  Ashwin Chari; David Haselbach; Jan-Martin Kirves; Juergen Ohmer; Elham Paknia; Niels Fischer; Oleg Ganichkin; Vanessa Möller; Jeremiah J Frye; Georg Petzold; Marc Jarvis; Michael Tietzel; Clemens Grimm; Jan-Michael Peters; Brenda A Schulman; Kai Tittmann; Jürgen Markl; Utz Fischer; Holger Stark
Journal:  Nat Methods       Date:  2015-08-03       Impact factor: 28.547

10.  Computational approaches to selecting and optimising targets for structural biology.

Authors:  Ian M Overton; Geoffrey J Barton
Journal:  Methods       Date:  2011-08-27       Impact factor: 3.608

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.