Literature DB >> 18206362

The enhanceosome.

Daniel Panne1.   

Abstract

The interferon-beta (IFN-beta) enhanceosome is a paradigm for understanding the role of transcription factor complexes in eukaryotic signal integration. Recent structural studies provide a complete atomic model of the enhanceosome at the protein-DNA interface. The composite model shows how binding of eight transcription factors to enhancer DNA creates a continuous recognition surface. The extensive overlap of individual binding sites creates a composite element that ensures that the enhancer operates as a single unit of regulation. The absence of major protein-protein interfaces between the transcription factors suggests that cooperative binding occurs through a combination of binding-induced conformational changes in DNA structure and specific interactions with coactivator proteins such as CBP/p300. Contacts with virtually every nucleotide explain why the enhancer is evolutionary conserved in mammalian genomes.

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Year:  2008        PMID: 18206362     DOI: 10.1016/j.sbi.2007.12.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  129 in total

1.  Quantitatively predictable control of Drosophila transcriptional enhancers in vivo with engineered transcription factors.

Authors:  Justin Crocker; Garth R Ilsley; David L Stern
Journal:  Nat Genet       Date:  2016-02-08       Impact factor: 38.330

2.  Nuclear factor κB subunits RelB and cRel negatively regulate Toll-like receptor 3-mediated β-interferon production via induction of transcriptional repressor protein YY1.

Authors:  Jakub Siednienko; Ashwini Maratha; Shuo Yang; Malgorzata Mitkiewicz; Sinéad M Miggin; Paul N Moynagh
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

Review 3.  Origins of specificity in protein-DNA recognition.

Authors:  Remo Rohs; Xiangshu Jin; Sean M West; Rohit Joshi; Barry Honig; Richard S Mann
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 4.  Innate antiviral immune signaling, viral evasion and modulation by HIV-1.

Authors:  Arjun Rustagi; Michael Gale
Journal:  J Mol Biol       Date:  2013-12-08       Impact factor: 5.469

5.  Oxidized Guanine Base Lesions Function in 8-Oxoguanine DNA Glycosylase-1-mediated Epigenetic Regulation of Nuclear Factor κB-driven Gene Expression.

Authors:  Lang Pan; Bing Zhu; Wenjing Hao; Xianlu Zeng; Spiros A Vlahopoulos; Tapas K Hazra; Muralidhar L Hegde; Zsolt Radak; Attila Bacsi; Allan R Brasier; Xueqing Ba; Istvan Boldogh
Journal:  J Biol Chem       Date:  2016-10-18       Impact factor: 5.157

6.  Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements.

Authors:  Harendra Guturu; Andrew C Doxey; Aaron M Wenger; Gill Bejerano
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-11-11       Impact factor: 6.237

Review 7.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

8.  Master transcription factors and mediator establish super-enhancers at key cell identity genes.

Authors:  Warren A Whyte; David A Orlando; Denes Hnisz; Brian J Abraham; Charles Y Lin; Michael H Kagey; Peter B Rahl; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

9.  Allosterism and signal transfer in DNA.

Authors:  Alexandra Balaceanu; Alberto Pérez; Pablo D Dans; Modesto Orozco
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

Review 10.  How eukaryotic genes are transcribed.

Authors:  Bryan J Venters; B Franklin Pugh
Journal:  Crit Rev Biochem Mol Biol       Date:  2009-06       Impact factor: 8.250

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