Literature DB >> 18205488

QM:QM electronic embedding using Mulliken atomic charges: energies and analytic gradients in an ONIOM framework.

Hrant P Hratchian1, Priya V Parandekar, Krishnan Raghavachari, Michael J Frisch, Thom Vreven.   

Abstract

An accurate first-principles treatment of chemical reactions for large systems remains a significant challenge facing electronic structure theory. Hybrid models, such as quantum mechanics:molecular mechanics (QM:MM) and quantum mechanics:quantum mechanics (QM:QM) schemes, provide a promising avenue for such studies. For many chemistries, including important reactions in materials science, molecular mechanics or semiempirical methods may not be appropriate, or parameters may not be available (e.g., surface chemistry of compound semiconductors such as indium phosphide or catalytic chemistry of transition metal oxides). In such cases, QM:QM schemes are of particular interest. In this work, a QM:QM electronic embedding model within the ONIOM (our own N-layer integrated molecular orbital molecular mechanics) extrapolation framework is presented. To define the embedding potential, we choose the real-system low-level Mulliken atomic charges. This results in a set of well-defined and unique embedding charges. However, the parametric dependence of the charges on molecular geometry complicates the energy gradient that is necessary for the efficient exploration of potential energy surfaces. We derive an efficient form for the forces where a single set of self-consistent field response equations is solved. Initial tests of the method and key algorithmic issues are discussed.

Entities:  

Year:  2008        PMID: 18205488     DOI: 10.1063/1.2814164

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Multilevel X-Pol: a fragment-based method with mixed quantum mechanical representations of different fragments.

Authors:  Yingjie Wang; Carlos P Sosa; Alessandro Cembran; Donald G Truhlar; Jiali Gao
Journal:  J Phys Chem B       Date:  2012-03-19       Impact factor: 2.991

2.  Dipole preserving and polarization consistent charges.

Authors:  Peng Zhang; Peng Bao; Jiali Gao
Journal:  J Comput Chem       Date:  2011-05-03       Impact factor: 3.376

3.  Gauging the flexibility of the active site in soybean lipoxygenase-1 (SLO-1) through an atom-centered density matrix propagation (ADMP) treatment that facilitates the sampling of rare events.

Authors:  Prasad Phatak; Isaiah Sumner; Srinivasan S Iyengar
Journal:  J Phys Chem B       Date:  2012-08-17       Impact factor: 2.991

4.  MoD-QM/MM Structural Refinement Method: Characterization of Hydrogen Bonding in the Oxytricha nova G-Quadruplex.

Authors:  Junming Ho; Michael B Newcomer; Christina M Ragain; Jose A Gascon; Enrique R Batista; J Patrick Loria; Victor S Batista
Journal:  J Chem Theory Comput       Date:  2014-10-08       Impact factor: 6.006

5.  Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method.

Authors:  Dawei Zhang
Journal:  Sci Rep       Date:  2017-03-16       Impact factor: 4.379

6.  Linear-Scaling Implementation of Multilevel Hartree-Fock Theory.

Authors:  Linda Goletto; Eirik F Kjønstad; Sarai D Folkestad; Ida-Marie Høyvik; Henrik Koch
Journal:  J Chem Theory Comput       Date:  2021-11-07       Impact factor: 6.006

7.  Explicit polarization (X-Pol) potential using ab initio molecular orbital theory and density functional theory.

Authors:  Lingchun Song; Jaebeom Han; Yen-lin Lin; Wangshen Xie; Jiali Gao
Journal:  J Phys Chem A       Date:  2009-10-29       Impact factor: 2.781

8.  Explicit polarization: a quantum mechanical framework for developing next generation force fields.

Authors:  Jiali Gao; Donald G Truhlar; Yingjie Wang; Michael J M Mazack; Patrick Löffler; Makenzie R Provorse; Pavel Rehak
Journal:  Acc Chem Res       Date:  2014-08-06       Impact factor: 22.384

9.  fromage: A library for the study of molecular crystal excited states at the aggregate scale.

Authors:  Miguel Rivera; Michael Dommett; Amir Sidat; Warda Rahim; Rachel Crespo-Otero
Journal:  J Comput Chem       Date:  2020-01-07       Impact factor: 3.376

  9 in total

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