Literature DB >> 18202182

Unique elastic properties of the spectrin tetramer as revealed by multiscale coarse-grained modeling.

Dina T Mirijanian1, Gregory A Voth.   

Abstract

The force-extension profile of tetrameric spectrin is determined by using multiscale computer simulation. Fluctuation results of atomistic simulations of double spectrin repeat units (DSRU) are used to systematically build a coarse-grained (CG) model for the tetrameric form of spectrin. It is found that the spectrin tetramer can be modeled as a soft polymer with a unique flat force-extension profile over the range of biologically important lengths. It is also concluded that in the cytoskeletal network of the red blood cell the tetramer is in an "overcompressed" state. These findings are in contrast to the commonly used models of spectrin tetramer elasticity, namely the "entropic spring" polymer models. From these results, it is concluded that stable intact helical linker regions are needed to maintain the soft elasticity of the spectrin tetramer.

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Year:  2008        PMID: 18202182      PMCID: PMC2234116          DOI: 10.1073/pnas.0707500105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Pathway shifts and thermal softening in temperature-coupled forced unfolding of spectrin domains.

Authors:  Richard Law; George Liao; Sandy Harper; Guoliang Yang; David W Speicher; Dennis E Discher
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

2.  Extending a spectrin repeat unit. II: rupture behavior.

Authors:  Sterling Paramore; Gary S Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2005-10-14       Impact factor: 4.033

3.  Unfolding a linker between helical repeats.

Authors:  Vanessa Ortiz; Steven O Nielsen; Michael L Klein; Dennis E Discher
Journal:  J Mol Biol       Date:  2005-04-15       Impact factor: 5.469

4.  Atomistic and coarse-grained analysis of double spectrin repeat units: the molecular origins of flexibility.

Authors:  Dina T Mirijanian; Jhih-Wei Chu; Gary S Ayton; Gregory A Voth
Journal:  J Mol Biol       Date:  2006-10-06       Impact factor: 5.469

Review 5.  Single-molecule experiments in vitro and in silico.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

6.  Coarse-grained modeling of the actin filament derived from atomistic-scale simulations.

Authors:  Jhih-Wei Chu; Gregory A Voth
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

7.  Red blood cell shapes as explained on the basis of curvature elasticity.

Authors:  H J Deuling; W Helfrich
Journal:  Biophys J       Date:  1976-08       Impact factor: 4.033

8.  Spectrin oligomerization is cooperatively coupled to membrane assembly: a linkage targeted by many hereditary hemolytic anemias?

Authors:  M Giorgi; C D Cianci; P G Gallagher; J S Morrow
Journal:  Exp Mol Pathol       Date:  2001-06       Impact factor: 3.362

9.  Thermoelasticity of red blood cell membrane.

Authors:  R Waugh; E A Evans
Journal:  Biophys J       Date:  1979-04       Impact factor: 4.033

10.  The molecular structure of human erythrocyte spectrin. Biophysical and electron microscopic studies.

Authors:  D M Shotton; B E Burke; D Branton
Journal:  J Mol Biol       Date:  1979-06-25       Impact factor: 5.469

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  9 in total

1.  Sequence composition and environment effects on residue fluctuations in protein structures.

Authors:  Anatoly M Ruvinsky; Ilya A Vakser
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

2.  Molecular dynamics simulation and coarse-grained analysis of the Arp2/3 complex.

Authors:  Jim Pfaendtner; Gregory A Voth
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

3.  Systematic coarse-graining of spectrin-level red blood cell models.

Authors:  Dmitry A Fedosov; Bruce Caswell; George Em Karniadakis
Journal:  Comput Methods Appl Mech Eng       Date:  2010-06-01       Impact factor: 6.756

4.  Fine mapping of hydrophobic contacts reassesses the organization of the first three dystrophin coiled-coil repeats.

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Journal:  Protein Sci       Date:  2019-01-14       Impact factor: 6.725

5.  Structural Configuration of Blood Cell Membranes Determines Their Nonlinear Deformation Properties.

Authors:  Elena Kozlova; Viktoria Sergunova; Vladimir Inozemtsev; Ekaterina Sherstyukova; Aleksandr Kozlov; Olga Gudkova; Aleksandr Chernysh
Journal:  Biomed Res Int       Date:  2022-04-18       Impact factor: 3.246

6.  The Physiological Molecular Shape of Spectrin: A Compact Supercoil Resembling a Chinese Finger Trap.

Authors:  Jeffrey W Brown; Esther Bullitt; Sira Sriswasdi; Sandra Harper; David W Speicher; C James McKnight
Journal:  PLoS Comput Biol       Date:  2015-06-11       Impact factor: 4.475

7.  Transformation of membrane nanosurface of red blood cells under hemin action.

Authors:  Elena Kozlova; Alexander Chernysh; Victor Moroz; Olga Gudkova; Victoria Sergunova; Artem Kuzovlev
Journal:  Sci Rep       Date:  2014-08-12       Impact factor: 4.379

8.  Rhombic organization of microvilli domains found in a cell model of the human intestine.

Authors:  Jonas Franz; Jonas Grünebaum; Marcus Schäfer; Dennis Mulac; Florian Rehfeldt; Klaus Langer; Armin Kramer; Christoph Riethmüller
Journal:  PLoS One       Date:  2018-01-10       Impact factor: 3.240

9.  High ferritin levels have major effects on the morphology of erythrocytes in Alzheimer's disease.

Authors:  Janette Bester; Antoinette V Buys; Boguslaw Lipinski; Douglas B Kell; Etheresia Pretorius
Journal:  Front Aging Neurosci       Date:  2013-12-06       Impact factor: 5.750

  9 in total

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