Literature DB >> 18199575

Does the structure-function model GREENLAB deal with crop phenotypic plasticity induced by plant spacing? A case study on tomato.

Qiaoxue Dong1, Gaëtan Louarn, Yiming Wang, Jean-Francois Barczi, Philippe de Reffye.   

Abstract

BACKGROUND AND AIMS: Plant growth models able to simulate phenotypic plasticity are increasingly required because (1) they should enable better predictions of the observed variations in crop production, yield and quality, and (2) their parameters are expected to have a more robust genetic basis, with possible implications for selection of quantitative traits such as growth- and allocation-related processes. The structure-function plant model, GREENLAB, simulates resource-dependent plasticity of plant architecture. Evidence for its generality has been previously reported, but always for plants grown in a limited range of environments. This paper aims to test the model concept to its limits by using plant spacing as a means to generate a gradient of competition for light, and by using a new crop species, tomato, known to exhibit a strong photomorphogenetic response.
METHODS: A greenhouse experiment was carried out with three homogeneous planting densities (plant spacing = 0.3, 0.6 and 1 m). Detailed records of plant development, plant architecture and organ growth were made throughout the growing period. Model calibration was performed for each situation using a statistical optimization procedure (multi-fitting). KEY RESULTS AND
CONCLUSIONS: Obvious limitations of the present version of the model appeared to account fully for the plant plasticity induced by inter-plant competition for light. A lack of stability was identified for some model parameters at very high planting density. In particular, those parameters characterizing organ sink strengths and governing light interception proved to be environment-dependent. Remarkably, however, responses of the parameter values concerned were consistent with actual growth measurements and with previously reported results. Furthermore, modifications of total biomass production and of allocation patterns induced by the planting-density treatments were accurately simulated using the sets of optimized parameters. These results demonstrate that the overall model structure is potentially able to reproduce the observed plant plasticity and suggest that sound biologically based adaptations could overcome the present model limitations. Potential options for model improvement are proposed, and the possibility of using the kernel algorithm currently available as a fitting tool to build up more sophisticated model versions is advocated.

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Year:  2008        PMID: 18199575      PMCID: PMC2710282          DOI: 10.1093/aob/mcm317

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  10 in total

1.  A dynamic, architectural plant model simulating resource-dependent growth.

Authors:  Hong-Ping Yan; Meng Zhen Kang; Philippe de Reffye; Michael Dingkuhn
Journal:  Ann Bot       Date:  2004-03-31       Impact factor: 4.357

2.  Parameter optimization and field validation of the functional-structural model GREENLAB for maize.

Authors:  Yan Guo; Yuntao Ma; Zhigang Zhan; Baoguo Li; Michael Dingkuhn; Delphine Luquet; Philippe De Reffye
Journal:  Ann Bot       Date:  2006-01-03       Impact factor: 4.357

Review 3.  A modular concept of phenotypic plasticity in plants.

Authors:  Hans de Kroon; Heidrun Huber; Josef F Stuefer; Jan M van Groenendael
Journal:  New Phytol       Date:  2005-04       Impact factor: 10.151

4.  Parameter stability of the functional-structural plant model GREENLAB as affected by variation within populations, among seasons and among growth stages.

Authors:  Yuntao Ma; Baoguo Li; Zhigang Zhan; Yan Guo; Delphine Luquet; Philippe de Reffye; Michael Dingkuhn
Journal:  Ann Bot       Date:  2006-12-07       Impact factor: 4.357

5.  Quantitative analysis of the phenotypic variability of shoot architecture in two grapevine (Vitis vinifera) cultivars.

Authors:  Gaëtan Louarn; Yann Guedon; Jeremie Lecoeur; Eric Lebon
Journal:  Ann Bot       Date:  2007-01-04       Impact factor: 4.357

6.  Computing competition for light in the GREENLAB model of plant growth: a contribution to the study of the effects of density on resource acquisition and architectural development.

Authors:  Paul-Henry Cournède; Amélie Mathieu; François Houllier; Daniel Barthélémy; Philippe de Reffye
Journal:  Ann Bot       Date:  2007-11-23       Impact factor: 4.357

7.  Competition for assimilates and fruit position affect fruit set in indeterminate greenhouse tomato.

Authors:  N Bertin
Journal:  Ann Bot       Date:  1995-01       Impact factor: 4.357

8.  Adaptive phenotypic plasticity: consensus and controversy.

Authors:  S Via; R Gomulkiewicz; G De Jong; S M Scheiner; C D Schlichting; P H Van Tienderen
Journal:  Trends Ecol Evol       Date:  1995-05       Impact factor: 17.712

9.  Towards a generic architectural model of tillering in Gramineae, as exemplified by spring wheat (Triticum aestivum).

Authors:  Jochem B Evers; Jan Vos; Christian Fournier; Bruno Andrieu; Michael Chelle; Paul C Struik
Journal:  New Phytol       Date:  2005-06       Impact factor: 10.151

10.  Using L-systems for modeling source-sink interactions, architecture and physiology of growing trees: the L-PEACH model.

Authors:  M T Allen; P Prusinkiewicz; T M DeJong
Journal:  New Phytol       Date:  2005-06       Impact factor: 10.151

  10 in total
  13 in total

1.  Comparison of three approaches to model grapevine organogenesis in conditions of fluctuating temperature, solar radiation and soil water content.

Authors:  B Pallas; C Loi; A Christophe; P H Cournède; J Lecoeur
Journal:  Ann Bot       Date:  2010-09-18       Impact factor: 4.357

2.  Correlation between dynamic tomato fruit-set and source-sink ratio: a common relationship for different plant densities and seasons?

Authors:  MengZhen Kang; LiLi Yang; BaoGui Zhang; Philippe de Reffye
Journal:  Ann Bot       Date:  2010-12-23       Impact factor: 4.357

3.  Computing competition for light in the GREENLAB model of plant growth: a contribution to the study of the effects of density on resource acquisition and architectural development.

Authors:  Paul-Henry Cournède; Amélie Mathieu; François Houllier; Daniel Barthélémy; Philippe de Reffye
Journal:  Ann Bot       Date:  2007-11-23       Impact factor: 4.357

4.  AmapSim: a structural whole-plant simulator based on botanical knowledge and designed to host external functional models.

Authors:  Jean-François Barczi; Hervé Rey; Yves Caraglio; Philippe de Reffye; Daniel Barthélémy; Qiao Xue Dong; Thierry Fourcaud
Journal:  Ann Bot       Date:  2007-08-31       Impact factor: 4.357

5.  Plant growth modelling and applications: the increasing importance of plant architecture in growth models.

Authors:  Thierry Fourcaud; Xiaopeng Zhang; Alexia Stokes; Hans Lambers; Christian Körner
Journal:  Ann Bot       Date:  2008-04-03       Impact factor: 4.357

6.  A new methodology based on sensitivity analysis to simplify the recalibration of functional-structural plant models in new conditions.

Authors:  Amélie Mathieu; Tiphaine Vidal; Alexandra Jullien; QiongLi Wu; Camille Chambon; Benoit Bayol; Paul-Henry Cournède
Journal:  Ann Bot       Date:  2018-08-27       Impact factor: 4.357

7.  A generic individual-based model to simulate morphogenesis, C-N acquisition and population dynamics in contrasting forage legumes.

Authors:  Gaëtan Louarn; Lucas Faverjon
Journal:  Ann Bot       Date:  2018-04-18       Impact factor: 4.357

8.  Characterization of the interactions between architecture and source-sink relationships in winter oilseed rape (Brassica napus) using the GreenLab model.

Authors:  Alexandra Jullien; Amélie Mathieu; Jean-Michel Allirand; Amélie Pinet; Philippe de Reffye; Paul-Henry Cournède; Bertrand Ney
Journal:  Ann Bot       Date:  2010-10-27       Impact factor: 4.357

9.  A stochastic model of tree architecture and biomass partitioning: application to Mongolian Scots pines.

Authors:  Feng Wang; Mengzhen Kang; Qi Lu; Véronique Letort; Hui Han; Yan Guo; Philippe de Reffye; Baoguo Li
Journal:  Ann Bot       Date:  2010-11-08       Impact factor: 4.357

10.  A functional and structural Mongolian Scots pine (Pinus sylvestris var. mongolica) model integrating architecture, biomass and effects of precipitation.

Authors:  Feng Wang; Véronique Letort; Qi Lu; Xuefeng Bai; Yan Guo; Philippe de Reffye; Baoguo Li
Journal:  PLoS One       Date:  2012-08-22       Impact factor: 3.240

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