Literature DB >> 18197229

Extended depth of focus in tomographic phase microscopy using a propagation algorithm.

Wonshik Choi1, Christopher Fang-Yen, Kamran Badizadegan, Ramachandra R Dasari, Michael S Feld.   

Abstract

Tomographic phase microscopy is a laser interferometry technique in which a 3D refractive index map of a biological sample is constructed from quantitative phase images collected at a set of illumination angles. Although the resulting tomographic images provide valuable information, their resolution declines at axial distances beyond about 1 microm from the focal plane. We describe an improved 3D reconstruction algorithm in which the field at the focal plane is numerically propagated to depths throughout the sample. Diffraction is thus incorporated, extending the depth of focus to more than 10 mum. Tomograms with improved focal depth are demonstrated for single HT29 cells.

Mesh:

Year:  2008        PMID: 18197229      PMCID: PMC2851251          DOI: 10.1364/ol.33.000171

Source DB:  PubMed          Journal:  Opt Lett        ISSN: 0146-9592            Impact factor:   3.776


  4 in total

1.  Imaging voltage-dependent cell motions with heterodyne Mach-Zehnder phase microscopy.

Authors:  Christopher Fang-Yen; Seungeun Oh; Yongkeun Park; Wonshik Choi; Sen Song; H Sebastian Seung; Ramachandra R Dasari; Michael S Feld
Journal:  Opt Lett       Date:  2007-06-01       Impact factor: 3.776

2.  Higher-order (nonlinear) diffraction tomography: reconstruction algorithms and computer simulation.

Authors:  G A Tsihrintzis; A J Devaney
Journal:  IEEE Trans Image Process       Date:  2000       Impact factor: 10.856

3.  Tomographic phase microscopy.

Authors:  Wonshik Choi; Christopher Fang-Yen; Kamran Badizadegan; Seungeun Oh; Niyom Lue; Ramachandra R Dasari; Michael S Feld
Journal:  Nat Methods       Date:  2007-08-12       Impact factor: 28.547

4.  Living specimen tomography by digital holographic microscopy: morphometry of testate amoeba.

Authors:  Florian Charrière; Nicolas Pavillon; Tristan Colomb; Christian Depeursinge; Thierry J Heger; Edward A D Mitchell; Pierre Marquet; Benjamin Rappaz
Journal:  Opt Express       Date:  2006-08-07       Impact factor: 3.894

  4 in total
  10 in total

1.  Imaging red blood cell dynamics by quantitative phase microscopy.

Authors:  Gabriel Popescu; YoungKeun Park; Wonshik Choi; Ramachandra R Dasari; Michael S Feld; Kamran Badizadegan
Journal:  Blood Cells Mol Dis       Date:  2008-04-01       Impact factor: 3.039

2.  Lens-free optical tomographic microscope with a large imaging volume on a chip.

Authors:  Serhan O Isikman; Waheb Bishara; Sam Mavandadi; Frank W Yu; Steve Feng; Randy Lau; Aydogan Ozcan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-19       Impact factor: 11.205

3.  Video-rate tomographic phase microscopy.

Authors:  Christopher Fang-Yen; Wonshik Choi; Yongjin Sung; Charles J Holbrow; Ramachandra R Dasari; Michael S Feld
Journal:  J Biomed Opt       Date:  2011 Jan-Feb       Impact factor: 3.170

4.  Polarization contrast optical diffraction tomography.

Authors:  Jos van Rooij; Jeroen Kalkman
Journal:  Biomed Opt Express       Date:  2020-03-20       Impact factor: 3.732

5.  Self-calibrated 3D differential phase contrast microscopy with optimized illumination.

Authors:  Ruiming Cao; Michael Kellman; David Ren; Regina Eckert; Laura Waller
Journal:  Biomed Opt Express       Date:  2022-02-24       Impact factor: 3.732

6.  Field-based angle-resolved light-scattering study of single live cells.

Authors:  Wonshik Choi; Chung-Chieh Yu; Christopher Fang-Yen; Kamran Badizadegan; Ramachandra R Dasari; Michael S Feld
Journal:  Opt Lett       Date:  2008-07-15       Impact factor: 3.776

7.  Optical diffraction tomography for high resolution live cell imaging.

Authors:  Yongjin Sung; Wonshik Choi; Christopher Fang-Yen; Kamran Badizadegan; Ramachandra R Dasari; Michael S Feld
Journal:  Opt Express       Date:  2009-01-05       Impact factor: 3.894

8.  Spatial light interference tomography (SLIT).

Authors:  Zhuo Wang; Daniel L Marks; Paul Scott Carney; Larry J Millet; Martha U Gillette; Agustin Mihi; Paul V Braun; Zhen Shen; Supriya G Prasanth; Gabriel Popescu
Journal:  Opt Express       Date:  2011-10-10       Impact factor: 3.894

9.  Multiple contrast metrics from the measurements of a digital confocal microscope.

Authors:  Alexandre S Goy; Michaël Unser; Demetri Psaltis
Journal:  Biomed Opt Express       Date:  2013-06-12       Impact factor: 3.732

10.  Dynamic 3D scene depth reconstruction via optical flow field rectification.

Authors:  You Yang; Qiong Liu; Rongrong Ji; Yue Gao
Journal:  PLoS One       Date:  2012-11-09       Impact factor: 3.240

  10 in total

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