Literature DB >> 18195002

Mechanical biochemistry of proteins one molecule at a time.

Andres F Oberhauser1, Mariano Carrión-Vázquez.   

Abstract

The activity of proteins and their complexes often involves the conversion of chemical energy (stored or supplied) into mechanical work through conformational changes. Mechanical forces are also crucial for the regulation of the structure and function of cells and tissues. Thus, the shape of eukaryotic cells (and by extension, that of the multicellular organisms they form) is the result of cycles of mechanosensing, mechanotransduction, and mechanoresponse. Recently developed single-molecule atomic force microscopy techniques can be used to manipulate single molecules, both in real time and under physiological conditions, and are ideally suited to directly quantify the forces involved in both intra- and intermolecular protein interactions. In combination with molecular biology and computer simulations, these techniques have been applied to characterize the unfolding and refolding reactions in a variety of proteins. Single-molecule mechanical techniques are providing fundamental information on the structure and function of proteins and are becoming an indispensable tool to understand how these molecules fold and work.

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Year:  2008        PMID: 18195002      PMCID: PMC2441867          DOI: 10.1074/jbc.R700050200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  67 in total

1.  Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation.

Authors:  R B Best; B Li; A Steward; V Daggett; J Clarke
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Reverse engineering of the giant muscle protein titin.

Authors:  Hongbin Li; Wolfgang A Linke; Andres F Oberhauser; Mariano Carrion-Vazquez; Jason G Kerkvliet; Hui Lu; Piotr E Marszalek; Julio M Fernandez
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

3.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

4.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

5.  Atomic force microscope.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-03-03       Impact factor: 9.161

Review 6.  Protein unfolding in the cell.

Authors:  Sumit Prakash; Andreas Matouschek
Journal:  Trends Biochem Sci       Date:  2004-11       Impact factor: 13.807

7.  Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques.

Authors:  Arun P Wiita; Sri Rama Koti Ainavarapu; Hector H Huang; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-27       Impact factor: 11.205

8.  The mechanical fingerprint of a parallel polyprotein dimer.

Authors:  Atom Sarkar; Sofia Caamano; Julio M Fernandez
Journal:  Biophys J       Date:  2006-12-08       Impact factor: 4.033

9.  Contour length and refolding rate of a small protein controlled by engineered disulfide bonds.

Authors:  Sri Rama Koti Ainavarapu; Jasna Brujic; Hector H Huang; Arun P Wiita; Hui Lu; Lewyn Li; Kirstin A Walther; Mariano Carrion-Vazquez; Hongbin Li; Julio M Fernandez
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

10.  A functional single-molecule binding assay via force spectroscopy.

Authors:  Yi Cao; M M Balamurali; Deepak Sharma; Hongbin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-25       Impact factor: 11.205

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  38 in total

1.  Mechanical anisotropy of ankyrin repeats.

Authors:  Whasil Lee; Xiancheng Zeng; Kristina Rotolo; Ming Yang; Christopher J Schofield; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Nonkinetic modeling of the mechanical unfolding of multimodular proteins: theory and experiments.

Authors:  F Benedetti; C Micheletti; G Bussi; S K Sekatskii; G Dietler
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

3.  Dynamics of protein folding and cofactor binding monitored by single-molecule force spectroscopy.

Authors:  Yi Cao; Hongbin Li
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

4.  Functional modes and residue flexibility control the anisotropic response of guanylate kinase to mechanical stress.

Authors:  Sophie Sacquin-Mora; Olivier Delalande; Marc Baaden
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

5.  Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.

Authors:  Whasil Lee; Xiancheng Zeng; Huan-Xiang Zhou; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

6.  Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.

Authors:  Wenzhe Lu; Surendra S Negi; Andres F Oberhauser; Werner Braun
Journal:  Proteins       Date:  2012-02-10

7.  Tightening the knot in phytochrome by single-molecule atomic force microscopy.

Authors:  Thomas Bornschlögl; David M Anstrom; Elisabeth Mey; Joachim Dzubiella; Matthias Rief; Katrina T Forest
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

8.  Protein folding and unfolding under force.

Authors:  Bharat Jagannathan; Susan Marqusee
Journal:  Biopolymers       Date:  2013-11       Impact factor: 2.505

Review 9.  Functional diversity of ankyrin repeats in microbial proteins.

Authors:  Souhaila Al-Khodor; Christopher T Price; Awdhesh Kalia; Yousef Abu Kwaik
Journal:  Trends Microbiol       Date:  2009-12-03       Impact factor: 17.079

10.  Tracking unfolding and refolding reactions of single proteins using atomic force microscopy methods.

Authors:  Paul J Bujalowski; Andres F Oberhauser
Journal:  Methods       Date:  2013-03-20       Impact factor: 3.608

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