Literature DB >> 18190180

Accuracy of typical approximations in classical models of intermolecular polarization.

Pär Söderhjelm1, Anders Ohrn, Ulf Ryde, Gunnar Karlström.   

Abstract

One of the largest limitations of standard molecular-mechanics force fields is the neglect of intermolecular polarization. Several attempts to cure this problem have been made, but the results have not always been fully satisfactory. In this paper, we present a quantitative study of the fundamental approximations that underlie polarization models for classical force fields. The induced charge density of a large set of molecular dimers is compared to supermolecular calculations for a hierarchy of simplified models. We study the effect of the Pauli principle, the local inhomogeneity of the electric field, the intramolecular coupling of the polarization response, and the fact that the induced density is a continuous function. We show that standard point-polarizability models work rather well, despite their lack of all these effects, because (1) there is a systematic error cancellation between the neglect of effects of the Pauli principle and the locally inhomogeneous electric field, and (2) the lack of intramolecular coupling and the use of a dipole expansion of the induced density have only minor effects on the polarization. However, the cancellation in (1) is not perfect, and therefore polarizable force-fields could be improved if both effects are explicitly treated.

Entities:  

Year:  2008        PMID: 18190180     DOI: 10.1063/1.2814240

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

Review 1.  Induced fit docking, and the use of QM/MM methods in docking.

Authors:  Mengang Xu; Markus A Lill
Journal:  Drug Discov Today Technol       Date:  2013-09

2.  Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions.

Authors:  Ye Mei; Andrew C Simmonett; Frank C Pickard; Robert A DiStasio; Bernard R Brooks; Yihan Shao
Journal:  J Phys Chem A       Date:  2015-05-18       Impact factor: 2.781

3.  The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.

Authors:  Yue Shi; Zhen Xia; Jiajing Zhang; Robert Best; Chuanjie Wu; Jay W Ponder; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2013       Impact factor: 6.006

  3 in total

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