Literature DB >> 19609321

Insights into SAGA function during gene expression.

Susana Rodríguez-Navarro1.   

Abstract

Histone modifications are a crucial source of epigenetic control. SAGA (Spt-Ada-Gcn5 acetyltransferase) is a chromatin-modifying complex that contains two distinct enzymatic activities, Gcn5 and Ubp8, through which it acetylates and deubiquitinates histone residues, respectively, thereby enforcing a pattern of modifications that is decisive in regulating gene expression. Here, I discuss the latest contributions to understanding the roles of the SAGA complex, highlighting the characterization of the SAGA-deubiquitination module, and emphasizing the functions newly ascribed to SAGA during transcription elongation and messenger-RNA export. These findings suggest that a crosstalk exists between chromatin remodelling, transcription and messenger-RNA export, which could constitute a checkpoint for accurate gene expression. I focus particularly on the new components of human SAGA, which was recently discovered and confirms the conservation of the SAGA complex throughout evolution.

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Year:  2009        PMID: 19609321      PMCID: PMC2726681          DOI: 10.1038/embor.2009.168

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  50 in total

Review 1.  Multi-tasking on chromatin with the SAGA coactivator complexes.

Authors:  Jeremy A Daniel; Patrick A Grant
Journal:  Mutat Res       Date:  2007-01-21       Impact factor: 2.433

2.  A TFTC/STAGA module mediates histone H2A and H2B deubiquitination, coactivates nuclear receptors, and counteracts heterochromatin silencing.

Authors:  Yue Zhao; Guillaume Lang; Saya Ito; Jacques Bonnet; Eric Metzger; Shun Sawatsubashi; Eriko Suzuki; Xavier Le Guezennec; Hendrik G Stunnenberg; Aleksey Krasnov; Sofia G Georgieva; Roland Schüle; Ken-Ichi Takeyama; Shigeaki Kato; László Tora; Didier Devys
Journal:  Mol Cell       Date:  2008-01-18       Impact factor: 17.970

Review 3.  Crosstalk among Histone Modifications.

Authors:  Tamaki Suganuma; Jerry L Workman
Journal:  Cell       Date:  2008-11-14       Impact factor: 41.582

4.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

Review 5.  Regulation of mRNP dynamics along the export pathway.

Authors:  Nahid Iglesias; Françoise Stutz
Journal:  FEBS Lett       Date:  2008-04-03       Impact factor: 4.124

Review 6.  Histone ubiquitination: triggering gene activity.

Authors:  Vikki M Weake; Jerry L Workman
Journal:  Mol Cell       Date:  2008-03-28       Impact factor: 17.970

7.  SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope.

Authors:  Ghislain G Cabal; Auguste Genovesio; Susana Rodriguez-Navarro; Christophe Zimmer; Olivier Gadal; Annick Lesne; Henri Buc; Frank Feuerbach-Fournier; Jean-Christophe Olivo-Marin; Eduard C Hurt; Ulf Nehrbass
Journal:  Nature       Date:  2006-06-08       Impact factor: 49.962

8.  Cluster analysis of mass spectrometry data reveals a novel component of SAGA.

Authors:  David W Powell; Connie M Weaver; Jennifer L Jennings; K Jill McAfee; Yue He; P Anthony Weil; Andrew J Link
Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

9.  The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression.

Authors:  Efrat Shema; Itay Tirosh; Yael Aylon; Jing Huang; Chaoyang Ye; Neta Moskovits; Nina Raver-Shapira; Neri Minsky; Judith Pirngruber; Gabi Tarcic; Pavla Hublarova; Lilach Moyal; Mali Gana-Weisz; Yosef Shiloh; Yossef Yarden; Steven A Johnsen; Borivoj Vojtesek; Shelley L Berger; Moshe Oren
Journal:  Genes Dev       Date:  2008-10-01       Impact factor: 11.361

10.  Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes.

Authors:  Kenneth K Lee; Selene K Swanson; Laurence Florens; Michael P Washburn; Jerry L Workman
Journal:  Epigenetics Chromatin       Date:  2009-02-18       Impact factor: 4.954

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  79 in total

Review 1.  ATAC-king the complexity of SAGA during evolution.

Authors:  Gianpiero Spedale; H Th Marc Timmers; W W M Pim Pijnappel
Journal:  Genes Dev       Date:  2012-03-15       Impact factor: 11.361

2.  Cellular GCN5 is a novel regulator of human adenovirus E1A-conserved region 3 transactivation.

Authors:  Jailal N G Ablack; Michael Cohen; Gobi Thillainadesan; Gregory J Fonseca; Peter Pelka; Joe Torchia; Joe S Mymryk
Journal:  J Virol       Date:  2012-05-23       Impact factor: 5.103

3.  A role for intersubunit interactions in maintaining SAGA deubiquitinating module structure and activity.

Authors:  Nadine L Samara; Alison E Ringel; Cynthia Wolberger
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

Review 4.  Functional interactions between nucleoporins and chromatin.

Authors:  Yun Liang; Martin W Hetzer
Journal:  Curr Opin Cell Biol       Date:  2010-10-26       Impact factor: 8.382

5.  Hypoxia elicits broad and systematic changes in protein subcellular localization.

Authors:  Robert Michael Henke; Ranita Ghosh Dastidar; Ajit Shah; Daniela Cadinu; Xiao Yao; Jagmohan Hooda; Li Zhang
Journal:  Am J Physiol Cell Physiol       Date:  2011-07-13       Impact factor: 4.249

6.  Endoplasmic reticulum stress-responsive transcription factor ATF6α directs recruitment of the Mediator of RNA polymerase II transcription and multiple histone acetyltransferase complexes.

Authors:  Dotan Sela; Lu Chen; Skylar Martin-Brown; Michael P Washburn; Laurence Florens; Joan Weliky Conaway; Ronald C Conaway
Journal:  J Biol Chem       Date:  2012-05-10       Impact factor: 5.157

7.  The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination.

Authors:  Lindsey Long; Joseph P Thelen; Melonnie Furgason; Mahmood Haj-Yahya; Ashraf Brik; Dongmei Cheng; Junmin Peng; Tingting Yao
Journal:  J Biol Chem       Date:  2014-02-13       Impact factor: 5.157

8.  The TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation.

Authors:  Malika Saint; Sonal Sawhney; Ishani Sinha; Rana Pratap Singh; Rashmi Dahiya; Anushikha Thakur; Rahul Siddharthan; Krishnamurthy Natarajan
Journal:  Mol Cell Biol       Date:  2014-02-18       Impact factor: 4.272

9.  Chromosome segregation and organization are targets of 5'-Fluorouracil in eukaryotic cells.

Authors:  Laura Mojardín; Javier Botet; Sergio Moreno; Margarita Salas
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

10.  A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression.

Authors:  Vikki M Weake; Selene K Swanson; Arcady Mushegian; Laurence Florens; Michael P Washburn; Susan M Abmayr; Jerry L Workman
Journal:  Genes Dev       Date:  2009-12-15       Impact factor: 11.361

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