Literature DB >> 18185928

Mechanisms of protein folding.

Ylva Ivarsson1, Carlo Travaglini-Allocatelli, Maurizio Brunori, Stefano Gianni.   

Abstract

Understanding the mechanism by which a polypeptide chain folds into its native structure is a central problem of modern biophysics. The collaborative efforts of experimental and theoretical studies recently raised the tantalizing possibility to define a unifying mechanism for protein folding. In this review we summarize some of these intriguing advances and analyze them together with a discussion on the new findings concerning the so-called downhill folding.

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Year:  2008        PMID: 18185928     DOI: 10.1007/s00249-007-0256-x

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  86 in total

1.  Critical role of beta-hairpin formation in protein G folding.

Authors:  E L McCallister; E Alm; D Baker
Journal:  Nat Struct Biol       Date:  2000-08

2.  Conservation of folding pathways in evolutionarily distant globin sequences.

Authors:  C Nishimura; S Prytulla; H J Dyson; P E Wright
Journal:  Nat Struct Biol       Date:  2000-08

3.  Measuring dynamic flexibility of the coil state of a helix-forming peptide.

Authors:  Lisa J Lapidus; William A Eaton; James Hofrichter
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

4.  Complete change of the protein folding transition state upon circular permutation.

Authors:  Magnus Lindberg; Jeanette Tångrot; Mikael Oliveberg
Journal:  Nat Struct Biol       Date:  2002-11

5.  Unifying features in protein-folding mechanisms.

Authors:  Stefano Gianni; Nicholas R Guydosh; Faaizah Khan; Teresa D Caldas; Ugo Mayor; George W N White; Mari L DeMarco; Valerie Daggett; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

6.  A simple thermodynamic test to discriminate between two-state and downhill folding.

Authors:  Fabiana Y Oliva; Victor Muñoz
Journal:  J Am Chem Soc       Date:  2004-07-21       Impact factor: 15.419

7.  Solution structure of a protein denatured state and folding intermediate.

Authors:  T L Religa; J S Markson; U Mayor; S M V Freund; A R Fersht
Journal:  Nature       Date:  2005-10-13       Impact factor: 49.962

8.  Unveiling a hidden folding intermediate in c-type cytochromes by protein engineering.

Authors:  Alessandro Borgia; Daniele Bonivento; Carlo Travaglini-Allocatelli; Adele Di Matteo; Maurizio Brunori
Journal:  J Biol Chem       Date:  2006-02-01       Impact factor: 5.157

Review 9.  Protein folding dynamics: the diffusion-collision model and experimental data.

Authors:  M Karplus; D L Weaver
Journal:  Protein Sci       Date:  1994-04       Impact factor: 6.725

10.  A common folding mechanism in the cytochrome c family.

Authors:  Carlo Travaglini-Allocatelli; Stefano Gianni; Maurizio Brunori
Journal:  Trends Biochem Sci       Date:  2004-10       Impact factor: 13.807

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  5 in total

1.  A natural missing link between activated and downhill protein folding scenarios.

Authors:  Feng Liu; Caroline Maynard; Gregory Scott; Artem Melnykov; Kathleen B Hall; Martin Gruebele
Journal:  Phys Chem Chem Phys       Date:  2010-02-11       Impact factor: 3.676

Review 2.  Structural determinants of protein folding.

Authors:  Tse Siang Kang; R Manjunatha Kini
Journal:  Cell Mol Life Sci       Date:  2009-04-15       Impact factor: 9.261

3.  Prediction of optimal folding routes of proteins that satisfy the principle of lowest entropy loss: dynamic contact maps and optimal control.

Authors:  Yaman Arkun; Burak Erman
Journal:  PLoS One       Date:  2010-10-12       Impact factor: 3.240

4.  Salt dependence of an alpha-helical peptide folding energy landscapes.

Authors:  Kan Xiong; Eliana K Asciutto; Jeffry D Madura; Sanford A Asher
Journal:  Biochemistry       Date:  2009-11-17       Impact factor: 3.162

5.  The change of conditions does not affect Ros87 downhill folding mechanism.

Authors:  Rinaldo Grazioso; Sara García-Viñuales; Gianluca D'Abrosca; Ilaria Baglivo; Paolo Vincenzo Pedone; Danilo Milardi; Roberto Fattorusso; Carla Isernia; Luigi Russo; Gaetano Malgieri
Journal:  Sci Rep       Date:  2020-12-03       Impact factor: 4.379

  5 in total

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