Literature DB >> 18178425

Unveiling substrate RNA binding to H/ACA RNPs: one side fits all.

Hong Li1.   

Abstract

The H/ACA RNP pseudouridylases function on a large number of extraordinarily complex RNA substrates including pre-ribosomal and small nuclear RNAs. Recent structural data show that H/ACA RNPs capture their RNA substrates via a simple one-sided attachment model. However, the precise placement of each RNA substrate into the active site of the catalytic subunit relies on the essential functions of the RNP proteins. The specific roles of each H/ACA RNP protein are being elucidated by a combination of structural and biochemical studies.

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Year:  2008        PMID: 18178425      PMCID: PMC2481233          DOI: 10.1016/j.sbi.2007.11.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  46 in total

1.  Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme.

Authors:  C Hoang; A R Ferré-D'Amaré
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

Review 2.  Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions.

Authors:  Tamás Kiss
Journal:  Cell       Date:  2002-04-19       Impact factor: 41.582

Review 3.  RNA-modifying enzymes.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

Review 4.  RNA-guided nucleotide modification of ribosomal and other RNAs.

Authors:  Wayne A Decatur; Maurille J Fournier
Journal:  J Biol Chem       Date:  2002-11-12       Impact factor: 5.157

5.  Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit.

Authors:  Hu Pan; Sanjay Agarwalla; Demetri T Moustakas; Janet Finer-Moore; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-17       Impact factor: 11.205

6.  Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center.

Authors:  Thomas H King; Ben Liu; Ryan R McCully; Maurille J Fournier
Journal:  Mol Cell       Date:  2003-02       Impact factor: 17.970

7.  The kink-turn: a new RNA secondary structure motif.

Authors:  D J Klein; T M Schmeing; P B Moore; T A Steitz
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

8.  A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture.

Authors:  M I Newby; N L Greenbaum
Journal:  RNA       Date:  2001-06       Impact factor: 4.942

9.  Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins.

Authors:  Chen Wang; U Thomas Meier
Journal:  EMBO J       Date:  2004-03-25       Impact factor: 11.598

10.  Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes.

Authors:  Xinliang Zhao; YiI-Tao Yu
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

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  16 in total

1.  An enhanced H/ACA RNP assembly mechanism for human telomerase RNA.

Authors:  Emily D Egan; Kathleen Collins
Journal:  Mol Cell Biol       Date:  2012-04-23       Impact factor: 4.272

2.  The box H/ACA snoRNP assembly factor Shq1p is a chaperone protein homologous to Hsp90 cochaperones that binds to the Cbf5p enzyme.

Authors:  Katherine S Godin; Hélène Walbott; Nicolas Leulliot; Herman van Tilbeurgh; Gabriele Varani
Journal:  J Mol Biol       Date:  2009-05-06       Impact factor: 5.469

3.  Long-distance placement of substrate RNA by H/ACA proteins.

Authors:  Bo Liang; Elliot J Kahen; Kate Calvin; Jing Zhou; Mario Blanco; Hong Li
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

4.  Mechanism of the AAA+ ATPases pontin and reptin in the biogenesis of H/ACA RNPs.

Authors:  Rosario Machado-Pinilla; Dominique Liger; Nicolas Leulliot; U Thomas Meier
Journal:  RNA       Date:  2012-08-24       Impact factor: 4.942

Review 5.  Progress in structural studies of telomerase.

Authors:  Edward J Miracco; Jiansen Jiang; Darian D Cash; Juli Feigon
Journal:  Curr Opin Struct Biol       Date:  2014-02-04       Impact factor: 6.809

6.  Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii.

Authors:  Ian K Blaby; Mrinmoyee Majumder; Kunal Chatterjee; Sujata Jana; Henri Grosjean; Valérie de Crécy-Lagard; Ramesh Gupta
Journal:  RNA       Date:  2011-05-31       Impact factor: 4.942

7.  Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs.

Authors:  Beáta E Jády; Amandine Ketele; Tamás Kiss
Journal:  Genes Dev       Date:  2012-08-14       Impact factor: 11.361

8.  The H/ACA RNP assembly factor SHQ1 functions as an RNA mimic.

Authors:  Hélène Walbott; Rosario Machado-Pinilla; Dominique Liger; Magali Blaud; Stéphane Réty; Petar N Grozdanov; Kate Godin; Herman van Tilbeurgh; Gabriele Varani; U Thomas Meier; Nicolas Leulliot
Journal:  Genes Dev       Date:  2011-11-15       Impact factor: 11.361

9.  SHQ1 is required prior to NAF1 for assembly of H/ACA small nucleolar and telomerase RNPs.

Authors:  Petar N Grozdanov; Sujayita Roy; Nupur Kittur; U Thomas Meier
Journal:  RNA       Date:  2009-04-21       Impact factor: 4.942

10.  Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA.

Authors:  Bo Liang; Jing Zhou; Elliot Kahen; Rebecca M Terns; Michael P Terns; Hong Li
Journal:  Nat Struct Mol Biol       Date:  2009-05-28       Impact factor: 15.369

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