Literature DB >> 18174420

Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry".

Mike Buckley1, Angela Walker, Simon Y W Ho, Yue Yang, Colin Smith, Peter Ashton, Jane Thomas Oates, Enrico Cappellini, Hannah Koon, Kirsty Penkman, Ben Elsworth, Dave Ashford, Caroline Solazzo, Phillip Andrews, John Strahler, Beth Shapiro, Peggy Ostrom, Hasand Gandhi, Webb Miller, Brian Raney, Maria Ines Zylber, M Thomas P Gilbert, Richard V Prigodich, Michael Ryan, Kenneth F Rijsdijk, Anwar Janoo, Matthew J Collins.   

Abstract

We used authentication tests developed for ancient DNA to evaluate claims by Asara et al. (Reports, 13 April 2007, p. 280) of collagen peptide sequences recovered from mastodon and Tyrannosaurus rex fossils. Although the mastodon samples pass these tests, absence of amino acid composition data, lack of evidence for peptide deamidation, and association of alpha1(I) collagen sequences with amphibians rather than birds suggest that T. rex does not.

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Year:  2008        PMID: 18174420      PMCID: PMC2694913          DOI: 10.1126/science.1147046

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  9 in total

1.  Identification of immunoreactive material in mammoth fossils.

Authors:  Mary Schweitzer; Christopher L Hill; John M Asara; William S Lane; Seth H Pincus
Journal:  J Mol Evol       Date:  2002-12       Impact factor: 2.395

Review 2.  Ancient DNA.

Authors:  Eske Willerslev; Alan Cooper
Journal:  Proc Biol Sci       Date:  2005-01-07       Impact factor: 5.349

3.  Assessing ancient DNA studies.

Authors:  M Thomas P Gilbert; Hans-Jürgen Bandelt; Michael Hofreiter; Ian Barnes
Journal:  Trends Ecol Evol       Date:  2005-07-21       Impact factor: 17.712

4.  Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry.

Authors:  John M Asara; Mary H Schweitzer; Lisa M Freimark; Matthew Phillips; Lewis C Cantley
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

5.  Analyses of soft tissue from Tyrannosaurus rex suggest the presence of protein.

Authors:  Mary Higby Schweitzer; Zhiyong Suo; Recep Avci; John M Asara; Mark A Allen; Fernando Teran Arce; John R Horner
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

6.  Interpreting sequences from mastodon and T. rex.

Authors:  John M Asara; John S Garavelli; David A Slatter; Mary H Schweitzer; Lisa M Freimark; Matthew Phillips; Lewis C Cantley
Journal:  Science       Date:  2007-09-07       Impact factor: 47.728

7.  Polymer-in-a-box mechanism for the thermal stabilization of collagen molecules in fibers.

Authors:  C A Miles; M Ghelashvili
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

8.  Structure-dependent nonenzymatic deamidation of glutaminyl and asparaginyl pentapeptides.

Authors:  N E Robinson; Z W Robinson; B R Robinson; A L Robinson; J A Robinson; M L Robinson; A B Robinson
Journal:  J Pept Res       Date:  2004-05

9.  Evidence for the presence of collagenous domains in Candida albicans cell surface proteins.

Authors:  P Sepúlveda; A Murgui; J L López-Ribot; M Casanova; J Timoneda; J P Martínez
Journal:  Infect Immun       Date:  1995-06       Impact factor: 3.441

  9 in total
  31 in total

1.  Preservation of ancient DNA in thermally damaged archaeological bone.

Authors:  Claudio Ottoni; Hannah E C Koon; Matthew J Collins; Kirsty E H Penkman; Olga Rickards; Oliver E Craig
Journal:  Naturwissenschaften       Date:  2008-11-29

2.  First investigation of the collagen D-band ultrastructure in fossilized vertebrate integument.

Authors:  Theagarten Lingham-Soliar; James Wesley-Smith
Journal:  Proc Biol Sci       Date:  2008-10-07       Impact factor: 5.349

3.  Organic preservation of fossil musculature with ultracellular detail.

Authors:  Maria McNamara; Patrick J Orr; Stuart L Kearns; Luis Alcalá; Pere Anadón; Enrique Peñalver-Mollá
Journal:  Proc Biol Sci       Date:  2009-10-14       Impact factor: 5.349

4.  Infrared mapping resolves soft tissue preservation in 50 million year-old reptile skin.

Authors:  N P Edwards; H E Barden; B E van Dongen; P L Manning; P L Larson; U Bergmann; W I Sellers; R A Wogelius
Journal:  Proc Biol Sci       Date:  2011-03-23       Impact factor: 5.349

5.  Preserved Proteins from Extinct Bison latifrons Identified by Tandem Mass Spectrometry; Hydroxylysine Glycosides are a Common Feature of Ancient Collagen.

Authors:  Ryan C Hill; Matthew J Wither; Travis Nemkov; Alexander Barrett; Angelo D'Alessandro; Monika Dzieciatkowska; Kirk C Hansen
Journal:  Mol Cell Proteomics       Date:  2015-05-06       Impact factor: 5.911

Review 6.  Proteogenomics to discover the full coding content of genomes: a computational perspective.

Authors:  Natalie Castellana; Vineet Bafna
Journal:  J Proteomics       Date:  2010-07-08       Impact factor: 4.044

7.  The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils.

Authors:  Morten E Allentoft; Matthew Collins; David Harker; James Haile; Charlotte L Oskam; Marie L Hale; Paula F Campos; Jose A Samaniego; M Thomas P Gilbert; Eske Willerslev; Guojie Zhang; R Paul Scofield; Richard N Holdaway; Michael Bunce
Journal:  Proc Biol Sci       Date:  2012-10-10       Impact factor: 5.349

8.  Protein sequences bound to mineral surfaces persist into deep time.

Authors:  Beatrice Demarchi; Shaun Hall; Teresa Roncal-Herrero; Colin L Freeman; Jos Woolley; Molly K Crisp; Julie Wilson; Anna Fotakis; Roman Fischer; Benedikt M Kessler; Rosa Rakownikow Jersie-Christensen; Jesper V Olsen; James Haile; Jessica Thomas; Curtis W Marean; John Parkington; Samantha Presslee; Julia Lee-Thorp; Peter Ditchfield; Jacqueline F Hamilton; Martyn W Ward; Chunting Michelle Wang; Marvin D Shaw; Terry Harrison; Manuel Domínguez-Rodrigo; Ross DE MacPhee; Amandus Kwekason; Michaela Ecker; Liora Kolska Horwitz; Michael Chazan; Roland Kröger; Jane Thomas-Oates; John H Harding; Enrico Cappellini; Kirsty Penkman; Matthew J Collins
Journal:  Elife       Date:  2016-09-27       Impact factor: 8.140

9.  Reanalysis of Tyrannosaurus rex Mass Spectra.

Authors:  Marshall Bern; Brett S Phinney; David Goldberg
Journal:  J Proteome Res       Date:  2009-09       Impact factor: 4.466

10.  Is amino acid racemization a useful tool for screening for ancient DNA in bone?

Authors:  Matthew J Collins; Kirsty E H Penkman; Nadin Rohland; Beth Shapiro; Reimer C Dobberstein; Stefanie Ritz-Timme; Michael Hofreiter
Journal:  Proc Biol Sci       Date:  2009-06-03       Impact factor: 5.349

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