Literature DB >> 18172736

New analytic results for speciation times in neutral models.

Tanja Gernhard1.   

Abstract

In this paper, we investigate the standard Yule model, and a recently studied model of speciation and extinction, the "critical branching process." We develop an analytic way-as opposed to the common simulation approach-for calculating the speciation times in a reconstructed phylogenetic tree. Simple expressions for the density and the moments of the speciation times are obtained. Methods for dating a speciation event become valuable, if for the reconstructed phylogenetic trees, no time scale is available. A missing time scale could be due to supertree methods, morphological data, or molecular data which violates the molecular clock. Our analytic approach is, in particular, useful for the model with extinction, since simulations of birth-death processes which are conditioned on obtaining n extant species today are quite delicate. Further, simulations are very time consuming for big n under both models.

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Year:  2008        PMID: 18172736     DOI: 10.1007/s11538-007-9291-0

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  9 in total

1.  Mutational pattern of a sample from a critical branching population.

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6.  Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times?

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7.  Exploring the power of Bayesian birth-death skyline models to detect mass extinction events from phylogenies with only extant taxa.

Authors:  Victoria Culshaw; Tanja Stadler; Isabel Sanmartín
Journal:  Evolution       Date:  2019-05-09       Impact factor: 3.694

8.  Divide to Conquer: Evolutionary History of Allioideae Tribes (Amaryllidaceae) Is Linked to Distinct Trends of Karyotype Evolution.

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Journal:  BMC Evol Biol       Date:  2015-12-08       Impact factor: 3.260

  9 in total

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