Literature DB >> 18171018

NMR-based metabolic profiling and metabonomic approaches to problems in molecular toxicology.

Muireann Coen1, Elaine Holmes, John C Lindon, Jeremy K Nicholson.   

Abstract

We have reviewed the main contributions to the development of NMR-based metabonomic and metabolic profiling approaches for toxicological assessment, biomarker discovery, and studies on toxic mechanisms. The metabonomic approach, (defined as the quantitative measurement of the multiparametric metabolic response of living systems to pathophysiological stimuli or genetic modification) was originally developed to assist interpretation in NMR-based toxicological studies. However, in recent years there has been extensive fusion with metabolomic and other metabolic profiling approaches developed in plant biology, and there is much wider coverage of the biomedical and environmental fields. Specifically, metabonomics involves the use of spectroscopic techniques with statistical and mathematical tools to elucidate dominant patterns and trends directly correlated with time-related metabolic fluctuations within spectral data sets usually derived from biofluids or tissue samples. Temporal multivariate metabolic signatures can be used to discover biomarkers of toxic effect, as general toxicity screening aids, or to provide novel mechanistic information. This approach is complementary to proteomics and genomics and is applicable to a wide range of problems, including disease diagnosis, evaluation of xenobiotic toxicity, functional genomics, and nutritional studies. The use of biological fluids as a source of whole organism metabolic information enhances the use of this approach in minimally invasive longitudinal studies.

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Year:  2008        PMID: 18171018     DOI: 10.1021/tx700335d

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  71 in total

1.  Global metabolic profiling procedures for urine using UPLC-MS.

Authors:  Elizabeth J Want; Ian D Wilson; Helen Gika; Georgios Theodoridis; Robert S Plumb; John Shockcor; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2010-06       Impact factor: 13.491

Review 2.  Transgenic mice and metabolomics for study of hepatic xenobiotic metabolism and toxicity.

Authors:  Frank J Gonzalez; Zhong-Ze Fang; Xiaochao Ma
Journal:  Expert Opin Drug Metab Toxicol       Date:  2015-04-02       Impact factor: 4.481

3.  Individual variation in macronutrient regulation measured by proton magnetic resonance spectroscopy of human plasma.

Authors:  Youngja Park; Seoung Bum Kim; Bing Wang; Roberto A Blanco; Ngoc-Anh Le; Shaoxiong Wu; Carolyn J Accardi; R Wayne Alexander; Thomas R Ziegler; Dean P Jones
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2009-05-20       Impact factor: 3.619

Review 4.  The emerging field of quantitative blood metabolomics for biomarker discovery in critical illnesses.

Authors:  Natalie J Serkova; Theodore J Standiford; Kathleen A Stringer
Journal:  Am J Respir Crit Care Med       Date:  2011-06-16       Impact factor: 21.405

5.  Sparse non-negative generalized PCA with applications to metabolomics.

Authors:  Genevera I Allen; Mirjana Maletić-Savatić
Journal:  Bioinformatics       Date:  2011-09-19       Impact factor: 6.937

6.  Development of a plasma pseudotargeted metabolomics method based on ultra-high-performance liquid chromatography-mass spectrometry.

Authors:  Fujian Zheng; Xinjie Zhao; Zhongda Zeng; Lichao Wang; Wangjie Lv; Qingqing Wang; Guowang Xu
Journal:  Nat Protoc       Date:  2020-06-24       Impact factor: 13.491

7.  A pilot metabolic profiling study in serum of patients with chronic kidney disease based on (1) H-NMR-spectroscopy.

Authors:  Suwen Qi; Xin Ouyang; Linqian Wang; Wujian Peng; Jinli Wen; Yong Dai
Journal:  Clin Transl Sci       Date:  2012-08-07       Impact factor: 4.689

8.  Signal processing for metagenomics: extracting information from the soup.

Authors:  Gail L Rosen; Bahrad A Sokhansanj; Robi Polikar; Mary Ann Bruns; Jacob Russell; Elaine Garbarine; Steve Essinger; Non Yok
Journal:  Curr Genomics       Date:  2009-11       Impact factor: 2.236

9.  Metabolomic analysis of human disease and its application to the eye.

Authors:  Stephen P Young; Graham R Wallace
Journal:  J Ocul Biol Dis Infor       Date:  2009-11-13

10.  Metabolomics: moving towards personalized medicine.

Authors:  Eugenio Baraldi; Silvia Carraro; Giuseppe Giordano; Fabiano Reniero; Giorgio Perilongo; Franco Zacchello
Journal:  Ital J Pediatr       Date:  2009-10-23       Impact factor: 2.638

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