Literature DB >> 18166034

Molecular dynamics simulations of beta-cyclodextrin-aziadamantane complexes in water.

Bernhard Sellner1, Gerhard Zifferer, Andreas Kornherr, Daniel Krois, Udo H Brinker.   

Abstract

Force-field-based atomistic simulations of host-guest supramolecular complexes between beta-cyclodextrin and several aziadamantane derivatives have been analyzed with respect to relative orientation and interaction energies, explicitly considering solvent (water) molecules. For each case, the calculations revealed two stable orientations of the guest within the host that are different in interaction energy. Fluctuation of and correlation between characteristic properties were analyzed. Among other things, it turned out that orientation angle and inclusion depth are clearly correlated. In addition, for the unsubstituted aziadamantane, the enthalpy of complex formation was calculated and compared to experimental results.

Entities:  

Year:  2008        PMID: 18166034     DOI: 10.1021/jp075493+

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Protein-ligand binding enthalpies from near-millisecond simulations: Analysis of a preorganization paradox.

Authors:  Amanda Li; Michael K Gilson
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

2.  Binding Thermodynamics and Kinetics Calculations Using Chemical Host and Guest: A Comprehensive Picture of Molecular Recognition.

Authors:  Zhiye Tang; Chia-En A Chang
Journal:  J Chem Theory Comput       Date:  2017-12-14       Impact factor: 6.006

3.  The role of L-arginine in inclusion complexes of omeprazole with cyclodextrins.

Authors:  Ana Figueiras; Jorge M G Sarraguça; Alberto A C C Pais; Rui A Carvalho; J Francisco Veiga
Journal:  AAPS PharmSciTech       Date:  2010-02-05       Impact factor: 3.246

4.  A model for the shuttle motions of puerarin and daidzin inside the cavity of β-cyclodextrin in aqueous acetic acid: insights from molecular dynamics simulations.

Authors:  Haiyang Zhang; Wei Feng; Cong Li; Yongqin Lv; Tianwei Tan
Journal:  J Mol Model       Date:  2011-04-27       Impact factor: 1.810

5.  Hydrotropic Solubilization by Urea Derivatives: A Molecular Dynamics Simulation Study.

Authors:  Yong Cui
Journal:  J Pharm (Cairo)       Date:  2013-02-21

6.  Computational Calorimetry: High-Precision Calculation of Host-Guest Binding Thermodynamics.

Authors:  Niel M Henriksen; Andrew T Fenley; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2015-09-08       Impact factor: 6.006

7.  Bridging Calorimetry and Simulation through Precise Calculations of Cucurbituril-Guest Binding Enthalpies.

Authors:  Andrew T Fenley; Niel M Henriksen; Hari S Muddana; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2014-07-23       Impact factor: 6.006

  7 in total

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