Literature DB >> 18160965

Towards a better bowl of rice: assigning function to tens of thousands of rice genes.

Ki-Hong Jung1, Gynheung An, Pamela C Ronald.   

Abstract

Rice, one of the most important food crops for humans, is the first crop plant to have its genome sequenced. Rice whole-genome microarrays, genome tiling arrays and genome-wide gene-indexed mutant collections have recently been generated. With the availability of these resources, discovering the function of the estimated 41,000 rice genes is now within reach. Such discoveries have broad practical implications for understanding the biological processes of rice and other economically important grasses such as cereals and bioenergy crops.

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Year:  2008        PMID: 18160965     DOI: 10.1038/nrg2286

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  47 in total

1.  Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome.

Authors:  Guojie Zhang; Guangwu Guo; Xueda Hu; Yong Zhang; Qiye Li; Ruiqiang Li; Ruhong Zhuang; Zhike Lu; Zengquan He; Xiaodong Fang; Li Chen; Wei Tian; Yong Tao; Karsten Kristiansen; Xiuqing Zhang; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2010-03-19       Impact factor: 9.043

2.  Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

Authors:  Jetty S S Ammiraju; Fei Lu; Abhijit Sanyal; Yeisoo Yu; Xiang Song; Ning Jiang; Ana Clara Pontaroli; Teri Rambo; Jennifer Currie; Kristi Collura; Jayson Talag; Chuanzhu Fan; Jose Luis Goicoechea; Andrea Zuccolo; Jinfeng Chen; Jeffrey L Bennetzen; Mingsheng Chen; Scott Jackson; Rod A Wing
Journal:  Plant Cell       Date:  2008-12-19       Impact factor: 11.277

3.  A robust plant RNA isolation method suitable for Affymetrix GeneChip analysis and quantitative real-time RT-PCR.

Authors:  Damla D Bilgin; Evan H DeLucia; Steven J Clough
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

4.  Brachypodium as a model for the grasses: today and the future.

Authors:  Jelena Brkljacic; Erich Grotewold; Randy Scholl; Todd Mockler; David F Garvin; Philippe Vain; Thomas Brutnell; Richard Sibout; Michael Bevan; Hikmet Budak; Ana L Caicedo; Caixia Gao; Yong Gu; Samuel P Hazen; Ben F Holt; Shin-Young Hong; Mark Jordan; Antonio J Manzaneda; Thomas Mitchell-Olds; Keiichi Mochida; Luis A J Mur; Chung-Mo Park; John Sedbrook; Michelle Watt; Shao Jian Zheng; John P Vogel
Journal:  Plant Physiol       Date:  2011-07-19       Impact factor: 8.340

5.  RiceNet v2: an improved network prioritization server for rice genes.

Authors:  Tak Lee; Taeyun Oh; Sunmo Yang; Junha Shin; Sohyun Hwang; Chan Yeong Kim; Hyojin Kim; Hongseok Shim; Jung Eun Shim; Pamela C Ronald; Insuk Lee
Journal:  Nucleic Acids Res       Date:  2015-03-26       Impact factor: 16.971

6.  Phylogenetic analysis of barley WRKY proteins and characterization of HvWRKY1 and -2 as repressors of the pathogen-inducible gene HvGER4c.

Authors:  Dilin Liu; Katja Leib; Puyan Zhao; Karl-Heinz Kogel; Gregor Langen
Journal:  Mol Genet Genomics       Date:  2014-08-20       Impact factor: 3.291

7.  A conserved threonine residue in the juxtamembrane domain of the XA21 pattern recognition receptor is critical for kinase autophosphorylation and XA21-mediated immunity.

Authors:  Xuewei Chen; Mawsheng Chern; Patrick E Canlas; Caiying Jiang; Deling Ruan; Peijian Cao; Pamela C Ronald
Journal:  J Biol Chem       Date:  2010-01-29       Impact factor: 5.157

Review 8.  Natural and artificial mutants as valuable resources for functional genomics and molecular breeding.

Authors:  Shu-Ye Jiang; Srinivasan Ramachandran
Journal:  Int J Biol Sci       Date:  2010-04-28       Impact factor: 6.580

9.  A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion.

Authors:  Mankesh Kumar; P Osman Basha; Anju Puri; Deepak Rajpurohit; Gursharn Singh Randhawa; Tilak Raj Sharma; Harcharan Singh Dhaliwal
Journal:  Funct Integr Genomics       Date:  2010-01-21       Impact factor: 3.410

10.  Detection of genomic deletions in rice using oligonucleotide microarrays.

Authors:  Myron Bruce; Ann Hess; Jianfa Bai; Ramil Mauleon; M Genaleen Diaz; Nobuko Sugiyama; Alicia Bordeos; Guo-Liang Wang; Hei Leung; Jan E Leach
Journal:  BMC Genomics       Date:  2009-03-25       Impact factor: 3.969

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