Literature DB >> 18160135

A benchmark test for a quantitative assessment of simple neuron models.

Renaud Jolivet1, Ryota Kobayashi, Alexander Rauch, Richard Naud, Shigeru Shinomoto, Wulfram Gerstner.   

Abstract

Several methods and algorithms have recently been proposed that allow for the systematic evaluation of simple neuron models from intracellular or extracellular recordings. Models built in this way generate good quantitative predictions of the future activity of neurons under temporally structured current injection. It is, however, difficult to compare the advantages of various models and algorithms since each model is designed for a different set of data. Here, we report about one of the first attempts to establish a benchmark test that permits a systematic comparison of methods and performances in predicting the activity of rat cortical pyramidal neurons. We present early submissions to the benchmark test and discuss implications for the design of future tests and simple neurons models.

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Year:  2007        PMID: 18160135     DOI: 10.1016/j.jneumeth.2007.11.006

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  42 in total

1.  Dynamics of excitability over extended timescales in cultured cortical neurons.

Authors:  Asaf Gal; Danny Eytan; Avner Wallach; Maya Sandler; Jackie Schiller; Shimon Marom
Journal:  J Neurosci       Date:  2010-12-01       Impact factor: 6.167

2.  Interspike interval correlation in a stochastic exponential integrate-and-fire model with subthreshold and spike-triggered adaptation.

Authors:  LieJune Shiau; Tilo Schwalger; Benjamin Lindner
Journal:  J Comput Neurosci       Date:  2015-04-19       Impact factor: 1.621

3.  Monosynaptic inference via finely-timed spikes.

Authors:  Jonathan Platkiewicz; Zachary Saccomano; Sam McKenzie; Daniel English; Asohan Amarasingham
Journal:  J Comput Neurosci       Date:  2021-01-28       Impact factor: 1.621

4.  Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.

Authors:  Samuel A Neymotin; Benjamin A Suter; Salvador Dura-Bernal; Gordon M G Shepherd; Michele Migliore; William W Lytton
Journal:  J Neurophysiol       Date:  2016-10-19       Impact factor: 2.714

5.  Inhibition of rhythmic neural spiking by noise: the occurrence of a minimum in activity with increasing noise.

Authors:  Boris S Gutkin; Jürgen Jost; Henry C Tuckwell
Journal:  Naturwissenschaften       Date:  2009-06-10

6.  Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold.

Authors:  Ryota Kobayashi; Yasuhiro Tsubo; Shigeru Shinomoto
Journal:  Front Comput Neurosci       Date:  2009-07-30       Impact factor: 2.380

7.  Automatic fitting of spiking neuron models to electrophysiological recordings.

Authors:  Cyrille Rossant; Dan F M Goodman; Jonathan Platkiewicz; Romain Brette
Journal:  Front Neuroinform       Date:  2010-03-05       Impact factor: 4.081

8.  Equilibrium and Response Properties of the Integrate-and-Fire Neuron in Discrete Time.

Authors:  Moritz Helias; Moritz Deger; Markus Diesmann; Stefan Rotter
Journal:  Front Comput Neurosci       Date:  2010-01-04       Impact factor: 2.380

9.  Instantaneous non-linear processing by pulse-coupled threshold units.

Authors:  Moritz Helias; Moritz Deger; Stefan Rotter; Markus Diesmann
Journal:  PLoS Comput Biol       Date:  2010-09-09       Impact factor: 4.475

10.  Consistent recovery of sensory stimuli encoded with MIMO neural circuits.

Authors:  Aurel A Lazar; Eftychios A Pnevmatikakis
Journal:  Comput Intell Neurosci       Date:  2009-09-22
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