Literature DB >> 18156668

Neutron protein crystallography: beyond the folding structure of biological macromolecules.

Nobuo Niimura1, Robert Bau.   

Abstract

Neutron diffraction provides an experimental method of directly locating H atoms in proteins, a technique complementary to ultra-high-resolution X-ray diffraction. Three different types of neutron diffractometers for biological macromolecules have been constructed in Japan, France and the USA, and they have been used to determine the crystal structures of proteins up to resolution limits of 1.5-2.5 A. Results relating to H-atom positions and hydration patterns in proteins have been obtained from these studies. Examples include the geometrical details of hydrogen bonds, the role of H atoms in enzymatic activity, CH3 configuration, H/D exchange in proteins and oligonucleotides, and the dynamical behavior of hydration structures, all of which have been extracted from these structural results and reviewed. Other techniques, such as the growth of large single crystals and a database of hydrogen and hydration in proteins, are described.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18156668     DOI: 10.1107/S0108767307043498

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  28 in total

1.  X-ray structure of perdeuterated diisopropyl fluorophosphatase (DFPase): perdeuteration of proteins for neutron diffraction.

Authors:  Marc Michael Blum; Stephen J Tomanicek; Harald John; B Leif Hanson; Heinz Rüterjans; Benno P Schoenborn; Paul Langan; Julian C H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-26

2.  Preliminary neutron and X-ray crystallographic studies of equine cyanomethemoglobin.

Authors:  A Y Kovalevsky; S Zoe Fisher; Sean Seaver; Marat Mustyakimov; Narayanasami Sukumar; Paul Langan; Timothy C Mueser; B Leif Hanson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-31

3.  Neutron structure and mechanistic studies of diisopropyl fluorophosphatase (DFPase).

Authors:  Julian C H Chen; Marat Mustyakimov; Benno P Schoenborn; Paul Langan; Marc Michael Blum
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

Review 4.  Large crystal growth by thermal control allows combined X-ray and neutron crystallographic studies to elucidate the protonation states in Aspergillus flavus urate oxidase.

Authors:  E Oksanen; M P Blakeley; F Bonneté; M T Dauvergne; F Dauvergne; M Budayova-Spano
Journal:  J R Soc Interface       Date:  2009-07-08       Impact factor: 4.118

5.  Time-of-flight neutron diffraction study of bovine γ-chymotrypsin at the Protein Crystallography Station.

Authors:  Louis M Lazar; S Zoe Fisher; Aaron G Moulin; Andrey Kovalevsky; Walter R P Novak; Paul Langan; Gregory A Petsko; Dagmar Ringe
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-04-27

6.  Large-volume protein crystal growth for neutron macromolecular crystallography.

Authors:  Joseph D Ng; James K Baird; Leighton Coates; Juan M Garcia-Ruiz; Teresa A Hodge; Sijay Huang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-30       Impact factor: 1.056

7.  Preliminary joint X-ray and neutron protein crystallographic studies of ecDHFR complexed with folate and NADP+.

Authors:  Qun Wan; Andrey Y Kovalevsky; Mark A Wilson; Brad C Bennett; Paul Langan; Chris Dealwis
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-25       Impact factor: 1.056

8.  Refinement of macromolecular structures against neutron data with SHELXL2013.

Authors:  Tim Gruene; Hinrich W Hahn; Anna V Luebben; Flora Meilleur; George M Sheldrick
Journal:  J Appl Crystallogr       Date:  2013-12-07       Impact factor: 3.304

9.  Multiscale characterization of protein conformational ensembles.

Authors:  Amarda Shehu; Lydia E Kavraki; Cecilia Clementi
Journal:  Proteins       Date:  2009-09

10.  Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules.

Authors:  Paul D Adams; Marat Mustyakimov; Pavel V Afonine; Paul Langan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-05-15
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.