Literature DB >> 18156337

Functional-genomics-based identification and characterization of open reading frames encoding alpha-glucoside-processing enzymes in the hyperthermophilic archaeon Pyrococcus furiosus.

Donald A Comfort1, Chung-Jung Chou, Shannon B Conners, Amy L VanFossen, Robert M Kelly.   

Abstract

Bioinformatics analysis and transcriptional response information for Pyrococcus furiosus grown on alpha-glucans led to the identification of a novel isomaltase (PF0132) representing a new glycoside hydrolase (GH) family, a novel GH57 beta-amylase (PF0870), and an extracellular starch-binding protein (1,141 amino acids; PF1109-PF1110), in addition to several other putative alpha-glucan-processing enzymes.

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Year:  2007        PMID： 18156337      PMCID： PMC2258559          DOI： 10.1128/AEM.01920-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  16 in total

1.  A new mathematical model for relative quantification in real-time RT-PCR.

Authors:  M W Pfaffl
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

2.  Prediction of operons in microbial genomes.

Authors:  M D Ermolaeva; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

3.  Characterization of an archaeal cyclodextrin glucanotransferase with a novel C-terminal domain.

Authors:  Naeem Rashid; Joel Cornista; Satoshi Ezaki; Toshiaki Fukui; Haruyuki Atomi; Tadayuki Imanaka
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

4.  Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  Keith R Shockley; Donald E Ward; Swapnil R Chhabra; Shannon B Conners; Clemente I Montero; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

5.  Dynamic metabolic adjustments and genome plasticity are implicated in the heat shock response of the extremely thermoacidophilic archaeon Sulfolobus solfataricus.

Authors:  Sabrina Tachdjian; Robert M Kelly
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

Review 6.  Structural and sequence-based classification of glycoside hydrolases.

Authors:  B Henrissat; G Davies
Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

7.  Pfam: a comprehensive database of protein domain families based on seed alignments.

Authors:  E L Sonnhammer; S R Eddy; R Durbin
Journal:  Proteins       Date:  1997-07

8.  Cloning, sequencing, and expression of the gene encoding amylopullulanase from Pyrococcus furiosus and biochemical characterization of the recombinant enzyme.

Authors:  G Dong; C Vieille; J G Zeikus
Journal:  Appl Environ Microbiol       Date:  1997-09       Impact factor: 4.792

9.  Purification and characterization of an alpha-glucosidase from a hyperthermophilic archaebacterium, Pyrococcus furiosus, exhibiting a temperature optimum of 105 to 115 degrees C.

Authors:  H R Costantino; S H Brown; R M Kelly
Journal:  J Bacteriol       Date:  1990-07       Impact factor: 3.490

10.  Bioinformatics of the glycoside hydrolase family 57 and identification of catalytic residues in amylopullulanase from Thermococcus hydrothermalis.

Authors:  Richard Zona; Florent Chang-Pi-Hin; Michael J O'Donohue; Stefan Janecek
Journal:  Eur J Biochem       Date:  2004-07
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  8 in total

1.  Sequence fingerprints of enzyme specificities from the glycoside hydrolase family GH57.

Authors:  Karol Blesák; Stefan Janeček
Journal:  Extremophiles       Date:  2012-04-22       Impact factor: 2.395

Review 2.  α-Amylase: an enzyme specificity found in various families of glycoside hydrolases.

Authors:  Štefan Janeček; Birte Svensson; E Ann MacGregor
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

3.  Identification and characterization of an archaeal kojibiose catabolic pathway in the hyperthermophilic Pyrococcus sp. strain ST04.

Authors:  Jong-Hyun Jung; Dong-Ho Seo; James F Holden; Cheon-Seok Park
Journal:  J Bacteriol       Date:  2014-01-03       Impact factor: 3.490

4.  Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.

Authors:  Robert Reichelt; Antonia Gindner; Michael Thomm; Winfried Hausner
Journal:  BMC Genomics       Date:  2016-01-08       Impact factor: 3.969

Review 5.  Glycoside Hydrolases and Glycosyltransferases from Hyperthermophilic Archaea: Insights on Their Characteristics and Applications in Biotechnology.

Authors:  Khadija Amin; Sylvain Tranchimand; Thierry Benvegnu; Ziad Abdel-Razzak; Hala Chamieh
Journal:  Biomolecules       Date:  2021-10-21

6.  Experimental and computational analysis of the secretome of the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  G Schmid; G Mathiesen; M O Arntzen; V G H Eijsink; M Thomm
Journal:  Extremophiles       Date:  2013-08-27       Impact factor: 2.395

7.  In silico analysis of the α-amylase family GH57: eventual subfamilies reflecting enzyme specificities.

Authors:  Mária Martinovičová; Štefan Janeček
Journal:  3 Biotech       Date:  2018-07-09       Impact factor: 2.406

Review 8.  Biotechnological applications of archaeal enzymes from extreme environments.

Authors:  Ma Ángeles Cabrera; Jenny M Blamey
Journal:  Biol Res       Date:  2018-10-05       Impact factor: 5.612
  8 in total

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