Literature DB >> 18156320

Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126.

Luc Schuler1, Sinéad M Ní Chadhain, Yves Jouanneau, Christine Meyer, Gerben J Zylstra, Pascal Hols, Spiros N Agathos.   

Abstract

In this study, the genes involved in the initial attack on fluorene by Sphingomonas sp. strain LB126 were investigated. The alpha and beta subunits of a dioxygenase complex (FlnA1-FlnA2), showing 63 and 51% sequence identity, respectively, to the subunits of an angular dioxygenase from the gram-positive dibenzofuran degrader Terrabacter sp. strain DBF63, were identified. When overexpressed in Escherichia coli, FlnA1-FlnA2 was responsible for the angular oxidation of fluorene, 9-hydroxyfluorene, 9-fluorenone, dibenzofuran, and dibenzo-p-dioxin. Moreover, FlnA1-FlnA2 was able to oxidize polycyclic aromatic hydrocarbons and heteroaromatics, some of which were not oxidized by the dioxygenase from Terrabacter sp. strain DBF63. The quantification of resulting oxidation products showed that fluorene and phenanthrene were the preferred substrates of FlnA1-FlnA2.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18156320      PMCID: PMC2258591          DOI: 10.1128/AEM.01627-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  44 in total

1.  PAH utilization by Pseudomonas rhodesiae KK1 isolated from a former manufactured-gas plant site.

Authors:  H-Y Kahng; K Nam; J J Kukor; B-J Yoon; D-H Lee; D-C Oh; S-K Kam; K-H Oh
Journal:  Appl Microbiol Biotechnol       Date:  2002-10-12       Impact factor: 4.813

2.  Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA.

Authors:  J R Marchesi; T Sato; A J Weightman; T A Martin; J C Fry; S J Hiom; D Dymock; W G Wade
Journal:  Appl Environ Microbiol       Date:  1998-02       Impact factor: 4.792

3.  Convergent and divergent points in catabolic pathways involved in utilization of fluoranthene, naphthalene, anthracene, and phenanthrene by Sphingomonas paucimobilis var. EPA505.

Authors:  S P Story; S H Parker; S S Hayasaka; M B Riley; E L Kline
Journal:  J Ind Microbiol Biotechnol       Date:  2001-06       Impact factor: 3.346

4.  Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons.

Authors:  Sandrine Demanèche; Christine Meyer; Julien Micoud; Mathilde Louwagie; John C Willison; Yves Jouanneau
Journal:  Appl Environ Microbiol       Date:  2004-11       Impact factor: 4.792

5.  Degradation of fluorene by Brevibacterium sp. strain DPO 1361: a novel C-C bond cleavage mechanism via 1,10-dihydro-1,10-dihydroxyfluoren-9-one.

Authors:  S P Trenz; K H Engesser; P Fischer; H J Knackmuss
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

6.  Plasmid-borne genes code for an angular dioxygenase involved in dibenzofuran degradation by Terrabacter sp. strain YK3.

Authors:  Toshiya Iida; Yuki Mukouzaka; Kaoru Nakamura; Toshiaki Kudo
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

7.  Oxidation of carbazole to 3-hydroxycarbazole by naphthalene 1,2-dioxygenase and biphenyl 2,3-dioxygenase.

Authors:  S M Resnick; D S Torok; D T Gibson
Journal:  FEMS Microbiol Lett       Date:  1993-11-01       Impact factor: 2.742

8.  Isolation and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase from acenaphthene and acenaphthylene degrading Sphingomonas sp. strain A4.

Authors:  Onruthai Pinyakong; Hiroshi Habe; Atsushi Kouzuma; Hideaki Nojiri; Hisakazu Yamane; Toshio Omori
Journal:  FEMS Microbiol Lett       Date:  2004-09-15       Impact factor: 2.742

9.  Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1.

Authors:  G J Zylstra; E Kim
Journal:  J Ind Microbiol Biotechnol       Date:  1997 Nov-Dec       Impact factor: 3.346

10.  Isolation and characterization of (+)-1,1a-dihydroxy-1-hydrofluoren-9-one formed by angular dioxygenation in the bacterial catabolism of fluorene.

Authors:  S A Selifonov; M Grifoll; J E Gurst; P J Chapman
Journal:  Biochem Biophys Res Commun       Date:  1993-05-28       Impact factor: 3.575

View more
  8 in total

1.  Characterization of novel polycyclic aromatic hydrocarbon dioxygenases from the bacterial metagenomic DNA of a contaminated soil.

Authors:  Angelina Chemerys; Eric Pelletier; Corinne Cruaud; Florence Martin; Fabien Violet; Yves Jouanneau
Journal:  Appl Environ Microbiol       Date:  2014-08-15       Impact factor: 4.792

2.  Shifts in microbial community structure during in situ surfactant-enhanced bioremediation of polycyclic aromatic hydrocarbon-contaminated soil.

Authors:  Lingwen Wang; Feng Li; Yu Zhan; Lizhong Zhu
Journal:  Environ Sci Pollut Res Int       Date:  2016-04-11       Impact factor: 4.223

3.  Growth kinetics of Pseudomonas aeruginosa RS1 on fluorene and dibenzothiophene, concomitant degradation kinetics and uptake mechanism.

Authors:  Prasenjit Ghosh; Suparna Mukherji
Journal:  3 Biotech       Date:  2021-03-26       Impact factor: 2.406

Review 4.  Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria.

Authors:  Robert A Kanaly; Shigeaki Harayama
Journal:  Microb Biotechnol       Date:  2009-06-22       Impact factor: 5.813

5.  Genomic and metabolic analysis of fluoranthene degradation pathway in Celeribacter indicus P73T.

Authors:  Junwei Cao; Qiliang Lai; Jun Yuan; Zongze Shao
Journal:  Sci Rep       Date:  2015-01-13       Impact factor: 4.379

6.  Draft Whole-Genome Sequence of the Fluorene-Degrading Sphingobium sp. Strain LB126, Isolated from Polycyclic Aromatic Hydrocarbon-Contaminated Soil.

Authors:  Floriana Augelletti; Julien Tremblay; Spiros N Agathos; Ben Stenuit
Journal:  Genome Announc       Date:  2018-04-12

7.  Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter.

Authors:  C Ryan Penton; Timothy A Johnson; John F Quensen; Shoko Iwai; James R Cole; James M Tiedje
Journal:  Front Microbiol       Date:  2013-09-17       Impact factor: 5.640

8.  Biotransformation of the high-molecular weight polycyclic aromatic hydrocarbon (PAH) benzo[k]fluoranthene by Sphingobium sp. strain KK22 and identification of new products of non-alternant PAH biodegradation by liquid chromatography electrospray ionization tandem mass spectrometry.

Authors:  Allyn H Maeda; Shinro Nishi; Yuji Hatada; Yasuhiro Ozeki; Robert A Kanaly
Journal:  Microb Biotechnol       Date:  2013-12-11       Impact factor: 5.813

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.