Literature DB >> 18154319

Efficient removal of formamidopyrimidines by 8-oxoguanine glycosylases.

Nirmala Krishnamurthy1, Kazuhiro Haraguchi, Marc M Greenberg, Sheila S David.   

Abstract

Under conditions of oxidative stress, the formamidopyrimidine lesions (FapyG and FapyA) are formed in competition with the corresponding 8-oxopurines (OG and OA) from a common intermediate. In order to reveal features of the repair of these lesions, and the potential contribution of repair in mitigating or exacerbating the mutagenic properties of Fapy lesions, their excision by three glycosylases, Fpg, hOGG1 and Ntg1, was examined in various base pair contexts under single-turnover conditions. FapyG was removed at least as efficiently as OG by all three glycosylases. In addition, the rates of removal of FapyG by Fpg and hOGG1 were influenced by their base pair partner, with preference for removal when base paired with the correct Watson-Crick partner C. With the FapyA lesion, Fpg and Ntg1 catalyze its removal more readily than OG opposite all four natural bases. In contrast, the removal of FapyA by hOGG1 was not as robust as FapyG or OG, and was only significant when the lesion was paired with C. The discrimination by the various glycosylases with respect to the opposing base was highly dependent on the identity of the lesion. OG induced the greatest selectivity against its removal when part of a promutagenic base pair. The superb activity of the various OG glycosylases toward removal of FapyG and FapyA in vitro suggests that these enzymes may act upon these oxidized lesions in vivo. The differences in the activity of the various glycosylases for removal of FapyG and FapyA compared to OG in nonmutagenic versus promutagenic base pair contexts may serve to alter the mutagenic profiles of these lesions in vivo.

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Year:  2007        PMID: 18154319      PMCID: PMC2424258          DOI: 10.1021/bi701619u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

1.  Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.

Authors:  J Christopher Fromme; Gregory L Verdine
Journal:  Nat Struct Biol       Date:  2002-07

Review 2.  The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine).

Authors:  M L Michaels; J H Miller
Journal:  J Bacteriol       Date:  1992-10       Impact factor: 3.490

3.  Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA.

Authors:  S D Bruner; D P Norman; G L Verdine
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

Review 4.  Repair and genetic consequences of endogenous DNA base damage in mammalian cells.

Authors:  Deborah E Barnes; Tomas Lindahl
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

Review 5.  Mechanisms of formation, genotoxicity, and mutation of guanine oxidation products.

Authors:  William L Neeley; John M Essigmann
Journal:  Chem Res Toxicol       Date:  2006-04       Impact factor: 3.739

Review 6.  Base-excision repair of oxidative DNA damage.

Authors:  Sheila S David; Valerie L O'Shea; Sucharita Kundu
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

7.  Substrate specificity of the Ogg1 protein of Saccharomyces cerevisiae: excision of guanine lesions produced in DNA by ionizing radiation- or hydrogen peroxide/metal ion-generated free radicals.

Authors:  B Karahalil; P M Girard; S Boiteux; M Dizdaroglu
Journal:  Nucleic Acids Res       Date:  1998-03-01       Impact factor: 16.971

8.  Release of 7-methylguanine residues whose imidazole rings have been opened from damaged DNA by a DNA glycosylase from Escherichia coli.

Authors:  C J Chetsanga; T Lindahl
Journal:  Nucleic Acids Res       Date:  1979-08-10       Impact factor: 16.971

9.  Unusual structural features of hydantoin lesions translate into efficient recognition by Escherichia coli Fpg.

Authors:  Nirmala Krishnamurthy; James G Muller; Cynthia J Burrows; Sheila S David
Journal:  Biochemistry       Date:  2007-07-27       Impact factor: 3.162

Review 10.  In vitro and in vivo effects of oxidative damage to deoxyguanosine.

Authors:  M M Greenberg
Journal:  Biochem Soc Trans       Date:  2004-02       Impact factor: 5.407

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  28 in total

Review 1.  The formamidopyrimidines: purine lesions formed in competition with 8-oxopurines from oxidative stress.

Authors:  Marc M Greenberg
Journal:  Acc Chem Res       Date:  2011-11-11       Impact factor: 22.384

2.  Steady-state, pre-steady-state, and single-turnover kinetic measurement for DNA glycosylase activity.

Authors:  Akira Sassa; William A Beard; David D Shock; Samuel H Wilson
Journal:  J Vis Exp       Date:  2013-08-19       Impact factor: 1.355

Review 3.  DNA base excision repair: a mechanism of trinucleotide repeat expansion.

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Journal:  Trends Biochem Sci       Date:  2012-01-27       Impact factor: 13.807

4.  The formamidopyrimidine derivative of 7-(2-oxoethyl)-2'-deoxyguanosine.

Authors:  Plamen P Christov; Ivan D Kozekov; Carmelo J Rizzo; Thomas M Harris
Journal:  Chem Res Toxicol       Date:  2008-08-09       Impact factor: 3.739

5.  Fanconi anemia proteins and endogenous stresses.

Authors:  Qishen Pang; Paul R Andreassen
Journal:  Mutat Res       Date:  2009-07-31       Impact factor: 2.433

6.  Profiling base excision repair glycosylases with synthesized transition state analogs.

Authors:  Aurea M Chu; James C Fettinger; Sheila S David
Journal:  Bioorg Med Chem Lett       Date:  2011-05-30       Impact factor: 2.823

7.  Incidence and persistence of 8-oxo-7,8-dihydroguanine within a hairpin intermediate exacerbates a toxic oxidation cycle associated with trinucleotide repeat expansion.

Authors:  Daniel A Jarem; Nicole R Wilson; Kelly M Schermerhorn; Sarah Delaney
Journal:  DNA Repair (Amst)       Date:  2011-07-02

Review 8.  Repair of oxidatively induced DNA damage by DNA glycosylases: Mechanisms of action, substrate specificities and excision kinetics.

Authors:  Miral Dizdaroglu; Erdem Coskun; Pawel Jaruga
Journal:  Mutat Res Rev Mutat Res       Date:  2017-02-16       Impact factor: 5.657

9.  Inhibition of DNA synthesis facilitates expansion of low-complexity repeats: is strand slippage stimulated by transient local depletion of specific dNTPs?

Authors:  Andrei Kuzminov
Journal:  Bioessays       Date:  2013-01-15       Impact factor: 4.345

10.  ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion.

Authors:  María Isabel Ponferrada-Marín; Teresa Roldán-Arjona; Rafael R Ariza
Journal:  Nucleic Acids Res       Date:  2009-05-13       Impact factor: 16.971

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