Literature DB >> 18093061

Developmental validation of reduced-size STR Miniplex primer sets.

Kerry L Opel1, Denise T Chung, Jirí Drábek, John M Butler, Bruce R McCord.   

Abstract

This paper describes a developmental validation study of three Miniplex sets covering 12 of the 13 CODIS loci. As these new sets will be used for the analysis of degraded and low level DNA, the validation studies were performed using 100-125 pg of DNA, the lowest input level at which peak balance, peak intensity, and allele consistency were stable. To demonstrate the applicability of the Miniplex sets to forensic casework, these validation studies were completed in accordance with the Scientific Working Group on DNA Analysis Methods (SWGDAM). A range of tests were performed including studies of concordance with standard multiplex kits, sensitivity and reproducibility, and PCR amplification conditions. Additionally, studies of mixtures, nonhuman and environmentally degraded DNA, and simulated forensic samples were performed. Our results demonstrate that Miniplex STR amplification procedures are a robust and sensitive tool for the analysis of degraded DNA.

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Substances:

Year:  2007        PMID: 18093061     DOI: 10.1111/j.1556-4029.2007.00584.x

Source DB:  PubMed          Journal:  J Forensic Sci        ISSN: 0022-1198            Impact factor:   1.832


  6 in total

1.  Forensic validation of the PowerPlex® ESI 16 STR Multiplex and comparison of performance with AmpFlSTR® SGM Plus®.

Authors:  Valerie C Tucker; Amanda J Kirkham; Andrew J Hopwood
Journal:  Int J Legal Med       Date:  2011-05-28       Impact factor: 2.686

2.  Efficacy of reduced-size short tandem repeat PCR analysis for degraded DNA samples.

Authors:  Jeongyong Kim; Hyojeong Kim; Youn-Hyoung Nam; Ja Hyun Lee; Hyo Sook Kim; Eungsoo Kim
Journal:  Genes Genomics       Date:  2021-04-19       Impact factor: 1.839

3.  Applications of Probe Capture Enrichment Next Generation Sequencing for Whole Mitochondrial Genome and 426 Nuclear SNPs for Forensically Challenging Samples.

Authors:  Shelly Y Shih; Nikhil Bose; Anna Beatriz R Gonçalves; Henry A Erlich; Cassandra D Calloway
Journal:  Genes (Basel)       Date:  2018-01-22       Impact factor: 4.096

4.  A new multiplex assay of 17 autosomal STRs and Amelogenin for forensic application.

Authors:  Suhua Zhang; Huaizhou Tian; Jun Wu; Shumin Zhao; Chengtao Li
Journal:  PLoS One       Date:  2013-02-25       Impact factor: 3.240

5.  Use of short tandem repeat fingerprinting to validate sample origins in hepatitis C virus molecular epidemiology studies.

Authors:  Victoria C Edwards; C Patrick McClure; Richard J P Brown; Emma Thompson; William L Irving; Jonathan K Ball
Journal:  J Gen Virol       Date:  2013-10-07       Impact factor: 3.891

6.  Whole genome nucleosome sequencing identifies novel types of forensic markers in degraded DNA samples.

Authors:  Chun-Nan Dong; Ya-Dong Yang; Shu-Jin Li; Ya-Ran Yang; Xiao-Jing Zhang; Xiang-Dong Fang; Jiang-Wei Yan; Bin Cong
Journal:  Sci Rep       Date:  2016-05-18       Impact factor: 4.379

  6 in total

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