Literature DB >> 18086667

A balancing act between net uptake of water during dihydrofolate binding and net release of water upon NADPH binding in R67 dihydrofolate reductase.

Shaileja Chopra1, Russell M Dooling, Caroline Glyn Horner, Elizabeth E Howell.   

Abstract

R67 dihydrofolate reductase (DHFR) catalyzes the reduction of dihydrofolate (DHF) to tetrahydrofolate using NADPH as a cofactor. This enzyme is a homotetramer possessing 222 symmetry, and a single active site pore traverses the length of the protein. A promiscuous binding surface can accommodate either DHF or NADPH, thus two nonproductive complexes can form (2NADPH or 2DHF) as well as a productive complex (NADPH.DHF). The role of water in binding was monitored using a number of different osmolytes. From isothermal titration calorimetry (ITC) studies, binding of NADPH is accompanied by the net release of 38 water molecules. In contrast, from both steady state kinetics and ITC studies, binding of DHF is accompanied by the net uptake of water. Although different osmolytes have similar effects on NADPH binding, variable results are observed when DHF binding is probed. Sensitivity to water activity can also be probed by an in vivo selection using the antibacterial drug, trimethoprim, where the water content of the media is decreased by increasing concentrations of sorbitol. The ability of wild type and mutant clones of R67 DHFR to allow host Escherichia coli to grow in the presence of trimethoprim plus added sorbitol parallels the catalytic efficiency of the DHFR clones, indicating water content strongly correlates with the in vivo function of R67 DHFR.

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Year:  2007        PMID: 18086667     DOI: 10.1074/jbc.M709443200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  8 in total

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Authors:  Steve A Seibold; Badri Nath Singh; Chunfen Zhang; Maria Kireeva; Céline Domecq; Annie Bouchard; Anthony M Nazione; Michael Feig; Robert I Cukier; Benoit Coulombe; Mikhail Kashlev; Michael Hampsey; Zachary F Burton
Journal:  Biochim Biophys Acta       Date:  2010-05-15

2.  Tuning of the H-transfer coordinate in primitive versus well-evolved enzymes.

Authors:  Atsushi Yahashiri; Elizabeth E Howell; Amnon Kohen
Journal:  Chemphyschem       Date:  2008-05-16       Impact factor: 3.102

Review 3.  Thermodynamics and solvent linkage of macromolecule-ligand interactions.

Authors:  Michael R Duff; Elizabeth E Howell
Journal:  Methods       Date:  2014-11-21       Impact factor: 3.608

4.  Crowders Steal Dihydrofolate Reductase Ligands through Quinary Interactions.

Authors:  Michael R Duff; Nidhi Desai; Michael A Craig; Pratul K Agarwal; Elizabeth E Howell
Journal:  Biochemistry       Date:  2019-02-18       Impact factor: 3.162

5.  In Vivo Titration of Folate Pathway Enzymes.

Authors:  Deepika Nambiar; Timkhite-Kulu Berhane; Robert Shew; Bryan Schwarz; Michael R Duff; Elizabeth E Howell
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

6.  A Structural Basis for Biguanide Activity.

Authors:  Scott A Gabel; Michael R Duff; Lars C Pedersen; Eugene F DeRose; Juno M Krahn; Elizabeth E Howell; Robert E London
Journal:  Biochemistry       Date:  2017-08-29       Impact factor: 3.162

7.  Aspects of Weak Interactions between Folate and Glycine Betaine.

Authors:  Purva P Bhojane; Michael R Duff; Khushboo Bafna; Gabriella P Rimmer; Pratul K Agarwal; Elizabeth E Howell
Journal:  Biochemistry       Date:  2016-11-01       Impact factor: 3.162

8.  Quantifying the molecular origins of opposite solvent effects on protein-protein interactions.

Authors:  Vincent Vagenende; Alvin X Han; Han B Pek; Bernard L W Loo
Journal:  PLoS Comput Biol       Date:  2013-05-16       Impact factor: 4.475

  8 in total

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