Literature DB >> 18084081

Crystallization and preliminary X-ray diffraction studies of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004.

Toshio Iwasaki1, Daijiro Ohmori, Nobutaka Shimizu, Takashi Kumasaka.   

Abstract

The iron-sulfur (Fe-S) cluster-biosynthesis (ISC) system of the gamma-proteobacterium Pseudomonas putida JCM 20004 contains a constitutively expressed vertebrate-type [2Fe-2S] ferredoxin, FdxB, which lacks the conserved free cysteine residue near the Fe-S cluster site that has been proposed to function in the catalysis of biological Fe-S cluster assembly in other bacterial homologues. Recombinant FdxB was heterologously overproduced in Escherichia coli, purified and crystallized in its oxidized form by the hanging-drop vapour-diffusion and streak-seeding methods using 1.6 M trisodium citrate dihydrate pH 6.5. The thin needle-shaped crystals diffract to 1.90 A resolution and belong to the hexagonal space group P6(1)22, with unit-cell parameters a = 87.58, c = 73.14 A. The asymmetric unit contains one protein molecule.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18084081      PMCID: PMC2344098          DOI: 10.1107/S1744309107045757

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

Review 1.  Structure, function, and formation of biological iron-sulfur clusters.

Authors:  Deborah C Johnson; Dennis R Dean; Archer D Smith; Michael K Johnson
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

2.  Purification and some properties of a 2Fe ferredoxin in Pseudomonas ovalis.

Authors:  D Ohmori; F Yamakura; K Suzuki
Journal:  Biochem Int       Date:  1989-03

3.  Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.

Authors:  Y Kakuta; T Horio; Y Takahashi; K Fukuyama
Journal:  Biochemistry       Date:  2001-09-18       Impact factor: 3.162

4.  Network of protein-protein interactions among iron-sulfur cluster assembly proteins in Escherichia coli.

Authors:  Umechiyo Tokumoto; Shinobu Nomura; Yoshiko Minami; Hisaaki Mihara; Shin-Ichiro Kato; Tatsuo Kurihara; Nobuyoshi Esaki; Hiroshi Kanazawa; Hiroshi Matsubara; Yasuhiro Takahashi
Journal:  J Biochem       Date:  2002-05       Impact factor: 3.387

Review 5.  Iron-sulfur clusters: nature's modular, multipurpose structures.

Authors:  H Beinert; R H Holm; E Münck
Journal:  Science       Date:  1997-08-01       Impact factor: 47.728

Review 6.  Iron-sulphur cluster biogenesis and mitochondrial iron homeostasis.

Authors:  Tracey A Rouault; Wing-Hang Tong
Journal:  Nat Rev Mol Cell Biol       Date:  2005-04       Impact factor: 94.444

7.  Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.

Authors:  Germaine Sainz; Jean Jakoncic; Larry C Sieker; Vivian Stojanoff; Nukri Sanishvili; Marcel Asso; Patrick Bertrand; Jean Armengaud; Yves Jouanneau
Journal:  J Biol Inorg Chem       Date:  2006-01-10       Impact factor: 3.358

8.  YAH1 of Saccharomyces cerevisiae: a new essential gene that codes for a protein homologous to human adrenodoxin.

Authors:  M H Barros; F G Nobrega
Journal:  Gene       Date:  1999-06-11       Impact factor: 3.688

Review 9.  Iron-sulfur-protein biogenesis in eukaryotes.

Authors:  Roland Lill; Ulrich Mühlenhoff
Journal:  Trends Biochem Sci       Date:  2005-03       Impact factor: 13.807

10.  Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

Authors:  K E Nelson; C Weinel; I T Paulsen; R J Dodson; H Hilbert; V A P Martins dos Santos; D E Fouts; S R Gill; M Pop; M Holmes; L Brinkac; M Beanan; R T DeBoy; S Daugherty; J Kolonay; R Madupu; W Nelson; O White; J Peterson; H Khouri; I Hance; P Chris Lee; E Holtzapple; D Scanlan; K Tran; A Moazzez; T Utterback; M Rizzo; K Lee; D Kosack; D Moestl; H Wedler; J Lauber; D Stjepandic; J Hoheisel; M Straetz; S Heim; C Kiewitz; J A Eisen; K N Timmis; A Düsterhöft; B Tümmler; C M Fraser
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

View more
  1 in total

1.  ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from Pseudomonas putida JCM 20004: structural and electron-nuclear double resonance characterization.

Authors:  Toshio Iwasaki; Reinhard Kappl; Gerhard Bracic; Nobutaka Shimizu; Daijiro Ohmori; Takashi Kumasaka
Journal:  J Biol Inorg Chem       Date:  2011-06-07       Impact factor: 3.358

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.