Literature DB >> 18083834

Global analysis of mRNA splicing.

Michael J Moore1, Pamela A Silver.   

Abstract

Alternative mRNA splicing is a rich source of transcript diversity in eukaryotic cells with broad roles in development and disease. Systems-wide experimental methods have started to define how global splicing regulation shapes complex biological properties and pathways. Here, we review these approaches, describe recent insights they have yielded, and discuss avenues of future investigation.

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Year:  2007        PMID： 18083834      PMCID： PMC2212243          DOI： 10.1261/rna.868008

Source DB:  PubMed          Journal:  RNA        ISSN： 1355-8382            Impact factor:   4.942


  55 in total

Review 1.  An extensive network of coupling among gene expression machines.

Authors:  Tom Maniatis; Robin Reed
Journal:  Nature       Date:  2002-04-04       Impact factor: 49.962

Review 2.  Mechanisms of alternative pre-messenger RNA splicing.

Authors:  Douglas L Black
Journal:  Annu Rev Biochem       Date:  2003-02-27       Impact factor: 23.643

3.  Predictive identification of exonic splicing enhancers in human genes.

Authors:  William G Fairbrother; Ru-Fang Yeh; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2002-07-11       Impact factor: 47.728

4.  Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.

Authors:  Jason M Johnson; John Castle; Philip Garrett-Engele; Zhengyan Kan; Patrick M Loerch; Christopher D Armour; Ralph Santos; Eric E Schadt; Roland Stoughton; Daniel D Shoemaker
Journal:  Science       Date:  2003-12-19       Impact factor: 47.728

5.  Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes.

Authors:  Richard E Green; Benjamin P Lewis; R Tyler Hillman; Marco Blanchette; Liana F Lareau; Aaron T Garnett; Donald C Rio; Steven E Brenner
Journal:  Bioinformatics       Date:  2003       Impact factor: 6.937

6.  Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs.

Authors:  Marco Blanchette; Emmanuel Labourier; Richard E Green; Steven E Brenner; Donald C Rio
Journal:  Mol Cell       Date:  2004-06-18       Impact factor: 17.970

7.  Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy.

Authors:  Jae Bum Kim; Gregory J Porreca; Lei Song; Steven C Greenway; Joshua M Gorham; George M Church; Christine E Seidman; J G Seidman
Journal:  Science       Date:  2007-06-08       Impact factor: 47.728

8.  CLIP identifies Nova-regulated RNA networks in the brain.

Authors:  Jernej Ule; Kirk B Jensen; Matteo Ruggiu; Aldo Mele; Aljaz Ule; Robert B Darnell
Journal:  Science       Date:  2003-11-14       Impact factor: 47.728

9.  Discovery of tissue-specific exons using comprehensive human exon microarrays.

Authors:  Tyson A Clark; Anthony C Schweitzer; Tina X Chen; Michelle K Staples; Gang Lu; Hui Wang; Alan Williams; John E Blume
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  Genome-wide identification of alternatively spliced mRNA targets of specific RNA-binding proteins.

Authors:  Mark D Robida; Andrew Rahn; Ravinder Singh
Journal:  PLoS One       Date:  2007-06-13       Impact factor: 3.240
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  37 in total

1.  Genome-wide RNAi screen discovers functional coupling of alternative splicing and cell cycle control to apoptosis regulation.

Authors:  Qingqing Wang; Pamela A Silver
Journal:  Cell Cycle       Date:  2010-11-15       Impact factor: 4.534

Review 2.  MECHANISMS IN ENDOCRINOLOGY: Alternative splicing: the new frontier in diabetes research.

Authors:  Jonàs Juan-Mateu; Olatz Villate; Décio L Eizirik
Journal:  Eur J Endocrinol       Date:  2015-12-01       Impact factor: 6.664

3.  Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing.

Authors:  Heather B Miller; Timothy J Robinson; Raluca Gordân; Alexander J Hartemink; Mariano A Garcia-Blanco
Journal:  RNA       Date:  2011-01-31       Impact factor: 4.942

Review 4.  Aberrant RNA splicing and its functional consequences in cancer cells.

Authors:  James D Fackenthal; Lucy A Godley
Journal:  Dis Model Mech       Date:  2008 Jul-Aug       Impact factor: 5.758

5.  Bipartite functions of the CREB co-activators selectively direct alternative splicing or transcriptional activation.

Authors:  Antonio L Amelio; Massimo Caputi; Michael D Conkright
Journal:  EMBO J       Date:  2009-07-30       Impact factor: 11.598

Review 6.  "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing.

Authors:  Duncan J Smith; Charles C Query; Maria M Konarska
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

7.  Spliceosomal genes in the D. discoideum genome: a comparison with those in H. sapiens, D. melanogaster, A. thaliana and S. cerevisiae.

Authors:  Bing Yu; Petra Fey; Karen E Kestin-Pilcher; Alexei Fedorov; Ashwin Prakash; Rex L Chisholm; Jane Y Wu
Journal:  Protein Cell       Date:  2011-06-12       Impact factor: 14.870

Review 8.  Networking in a global world: establishing functional connections between neural splicing regulators and their target transcripts.

Authors:  John A Calarco; Mei Zhen; Benjamin J Blencowe
Journal:  RNA       Date:  2011-03-17       Impact factor: 4.942

Review 9.  RNA processing and its regulation: global insights into biological networks.

Authors:  Donny D Licatalosi; Robert B Darnell
Journal:  Nat Rev Genet       Date:  2010-01       Impact factor: 53.242

10.  Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL.

Authors:  Shalini Oberdoerffer; Luis Ferreira Moita; Daniel Neems; Rui P Freitas; Nir Hacohen; Anjana Rao
Journal:  Science       Date:  2008-07-10       Impact factor: 47.728
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