Literature DB >> 18082394

Circuit reconstruction tools today.

Stephen J Smith1.   

Abstract

To understand how a brain processes information, we must understand the structure of its neural circuits-especially circuit interconnection topologies and the cell and synapse molecular architectures that determine circuit-signaling dynamics. Our information on these key aspects of neural circuit structure has remained incomplete and fragmentary, however, because of limitations of the best available imaging methods. Now, new transgenic tool mice and new image acquisition tools appear poised to permit very significant advances in our abilities to reconstruct circuit connection topologies and molecular architectures.

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Year:  2007        PMID: 18082394      PMCID: PMC2693015          DOI: 10.1016/j.conb.2007.11.004

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  39 in total

1.  The excitatory neuronal network of rat layer 4 barrel cortex.

Authors:  C C Petersen; B Sakmann
Journal:  J Neurosci       Date:  2000-10-15       Impact factor: 6.167

2.  Fluorescent labeling of recombinant proteins in living cells with FlAsH.

Authors:  B A Griffin; S R Adams; J Jones; R Y Tsien
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

3.  Formation of dendritic spines with GABAergic synapses induced by whisker stimulation in adult mice.

Authors:  Graham W Knott; Charles Quairiaux; Christel Genoud; Egbert Welker
Journal:  Neuron       Date:  2002-04-11       Impact factor: 17.173

4.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

5.  Antibodies as valuable neuroscience research tools versus reagents of mass distraction.

Authors:  Kenneth J Rhodes; James S Trimmer
Journal:  J Neurosci       Date:  2006-08-02       Impact factor: 6.167

6.  Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP.

Authors:  G Feng; R H Mellor; M Bernstein; C Keller-Peck; Q T Nguyen; M Wallace; J M Nerbonne; J W Lichtman; J R Sanes
Journal:  Neuron       Date:  2000-10       Impact factor: 17.173

7.  Dynamic receptive fields of reconstructed pyramidal cells in layers 3 and 2 of rat somatosensory barrel cortex.

Authors:  Michael Brecht; Arnd Roth; Bert Sakmann
Journal:  J Physiol       Date:  2003-08-29       Impact factor: 5.182

8.  Origins of cortical interneuron subtypes.

Authors:  Qing Xu; Inma Cobos; Estanislao De La Cruz; John L Rubenstein; Stewart A Anderson
Journal:  J Neurosci       Date:  2004-03-17       Impact factor: 6.167

9.  Mouse SmI cortex: qualitative and quantitative classification of golgi-impregnated barrel neurons.

Authors:  T A Woolsey; M L Dierker; D F Wann
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

Review 10.  Active sensation: insights from the rodent vibrissa sensorimotor system.

Authors:  David Kleinfeld; Ehud Ahissar; Mathew E Diamond
Journal:  Curr Opin Neurobiol       Date:  2006-07-11       Impact factor: 6.627

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  33 in total

1.  A Bayesian compressed-sensing approach for reconstructing neural connectivity from subsampled anatomical data.

Authors:  Yuriy Mishchenko; Liam Paninski
Journal:  J Comput Neurosci       Date:  2012-03-22       Impact factor: 1.621

2.  Accelerating feature based registration using the Johnson-Lindenstrauss Lemma.

Authors:  Ayelet Akselrod-Ballin; Davi Bock; R Clay Reid; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

Review 3.  Neuronal network analyses: premises, promises and uncertainties.

Authors:  David Parker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-12       Impact factor: 6.237

Review 4.  Ome sweet ome: what can the genome tell us about the connectome?

Authors:  Jeff W Lichtman; Joshua R Sanes
Journal:  Curr Opin Neurobiol       Date:  2008-06       Impact factor: 6.627

Review 5.  Neuronal tracing for connectomic studies.

Authors:  Ju Lu
Journal:  Neuroinformatics       Date:  2011-09

Review 6.  Micro-rewiring as a substrate for learning.

Authors:  William M DeBello
Journal:  Trends Neurosci       Date:  2008-09-23       Impact factor: 13.837

7.  Scalable and interactive segmentation and visualization of neural processes in EM datasets.

Authors:  Won-Ki Jeong; Johanna Beyer; Markus Hadwiger; Amelio Vazquez; Hanspeter Pfister; Ross T Whitaker
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

8.  NeuronBank: A Tool for Cataloging Neuronal Circuitry.

Authors:  Paul S Katz; Robert Calin-Jageman; Akshaye Dhawan; Chad Frederick; Shuman Guo; Rasanjalee Dissanayaka; Naveen Hiremath; Wenjun Ma; Xiuyn Shen; Hsui C Wang; Hong Yang; Sushil Prasad; Rajshekhar Sunderraman; Ying Zhu
Journal:  Front Syst Neurosci       Date:  2010-04-19

9.  Counting Synapses Using FIB/SEM Microscopy: A True Revolution for Ultrastructural Volume Reconstruction.

Authors:  Angel Merchán-Pérez; José-Rodrigo Rodriguez; Lidia Alonso-Nanclares; Andreas Schertel; Javier Defelipe
Journal:  Front Neuroanat       Date:  2009-10-05       Impact factor: 3.856

10.  On optical detection of densely labeled synapses in neuropil and mapping connectivity with combinatorially multiplexed fluorescent synaptic markers.

Authors:  Yuriy Mishchenko
Journal:  PLoS One       Date:  2010-01-22       Impact factor: 3.240

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