Literature DB >> 18079727

Purification and characterization of transcribed RNAs using gel filtration chromatography.

Sean A McKenna1, Insil Kim, Elisabetta Viani Puglisi, Darrin A Lindhout, Colin Echeverría Aitken, R Andrew Marshall, Joseph D Puglisi.   

Abstract

RNA synthesis using in vitro transcription by phage T7 RNA polymerase allows preparation of milligram quantities of RNA for biochemical, biophysical and structural investigations. Previous purification approaches relied on gel electrophoretic or gravity-flow chromatography methods. We present here a protocol for the in vitro transcription of RNAs and subsequent purification using fast-performance liquid chromatography. This protocol greatly facilitates production of RNA in a single day from transcription to purification.

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Year:  2007        PMID: 18079727     DOI: 10.1038/nprot.2007.480

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  37 in total

1.  Thermodynamics and kinetics of RNA tertiary structure formation in the junctionless hairpin ribozyme.

Authors:  Neil A White; Charles G Hoogstraten
Journal:  Biophys Chem       Date:  2017-07-08       Impact factor: 2.352

2.  A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold.

Authors:  Luc Ponchon; Geneviève Beauvais; Sylvie Nonin-Lecomte; Frédéric Dardel
Journal:  Nat Protoc       Date:  2009-05-28       Impact factor: 13.491

3.  Multiple Parallel Pathways of Translation Initiation on the CrPV IRES.

Authors:  Alexey Petrov; Rosslyn Grosely; Jin Chen; Seán E O'Leary; Joseph D Puglisi
Journal:  Mol Cell       Date:  2016-04-07       Impact factor: 17.970

4.  Structural basis for λN-dependent processive transcription antitermination.

Authors:  Nelly Said; Ferdinand Krupp; Ekaterina Anedchenko; Karine F Santos; Olexandr Dybkov; Yong-Heng Huang; Chung-Tien Lee; Bernhard Loll; Elmar Behrmann; Jörg Bürger; Thorsten Mielke; Justus Loerke; Henning Urlaub; Christian M T Spahn; Gert Weber; Markus C Wahl
Journal:  Nat Microbiol       Date:  2017-04-28       Impact factor: 17.745

5.  Small Molecule Targeting of a MicroRNA Associated with Hepatocellular Carcinoma.

Authors:  Jessica L Childs-Disney; Matthew D Disney
Journal:  ACS Chem Biol       Date:  2015-12-07       Impact factor: 5.100

Review 6.  Advances in methods for native expression and purification of RNA for structural studies.

Authors:  Robert T Batey
Journal:  Curr Opin Struct Biol       Date:  2014-02-28       Impact factor: 6.809

7.  Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35.

Authors:  Daisy W Leung; Kathleen C Prins; Dominika M Borek; Mina Farahbakhsh; JoAnn M Tufariello; Parameshwaran Ramanan; Jay C Nix; Luke A Helgeson; Zbyszek Otwinowski; Richard B Honzatko; Christopher F Basler; Gaya K Amarasinghe
Journal:  Nat Struct Mol Biol       Date:  2010-01-17       Impact factor: 15.369

8.  Nondenaturing purification of co-transcriptionally folded RNA avoids common folding heterogeneity.

Authors:  Miguel J B Pereira; Vivek Behera; Nils G Walter
Journal:  PLoS One       Date:  2010-09-23       Impact factor: 3.240

9.  Defining RNA motif-aminoglycoside interactions via two-dimensional combinatorial screening and structure-activity relationships through sequencing.

Authors:  Sai Pradeep Velagapudi; Matthew D Disney
Journal:  Bioorg Med Chem       Date:  2013-05-07       Impact factor: 3.641

Review 10.  Isotope labeling strategies for NMR studies of RNA.

Authors:  Kun Lu; Yasuyuki Miyazaki; Michael F Summers
Journal:  J Biomol NMR       Date:  2009-09-30       Impact factor: 2.835

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