Literature DB >> 18076040

Functional and structural features of the oxyanion hole in a thermophilic esterase from Alicyclobacillus acidocaldarius.

Luigi Mandrich1, Valeria Menchise, Vincenzo Alterio, Giuseppina De Simone, Carlo Pedone, Mosè Rossi, Giuseppe Manco.   

Abstract

Recent mutagenic and molecular modelling studies suggested a role for glycine 84 in the putative oxyanion loop of the carboxylesterase EST2 from Alicyclobacillus acidocaldarius. A 114 times decrease of the esterase catalytic activity of the G84S mutant was observed, without changes in the thermal stability. The recently solved three-dimensional (3D) structure of EST2 in complex with a HEPES molecule permitted to demonstrate that G84 (together with G83 and A156) is involved in the stabilization of the oxyanion through a hydrogen bond from its main chain NH group. The structural data in this case did not allowed us to rationalize the effect of the mutation, since this hydrogen bond was predicted to be unaltered in the mutant. Since the mutation could shed light on the role of the oxyanion loop in the HSL family, experiments to elucidate at the mechanistic level the reasons of the observed drop in k (cat) were devised. In this work, the kinetic and structural features of the G84S mutant were investigated in more detail. The optimal temperature and pH for the activity of the mutated enzyme were found significantly changed (T = 65 degrees C and pH = 5.75). The catalytic constants K (M) and V(max) were found considerably altered in the mutant, with ninefold increased K (M) and 14-fold decreased V(max), at pH 5.75. At pH 7.1, the decrease in k (cat) was much more dramatic. The measurement of kinetic constants for some steps of the reaction mechanism and the resolution of the mutant 3D structure provided evidences that the observed effects were partly due to the steric hindrance of the S84-OH group towards the ester substrate and partly to its interference with the nucleophilic attack of a water molecule on the second tetrahedral intermediate. (c) 2007 Wiley-Liss, Inc.

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Year:  2008        PMID: 18076040     DOI: 10.1002/prot.21877

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  10 in total

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3.  Distinctive structural motifs co-ordinate the catalytic nucleophile and the residues of the oxyanion hole in the alpha/beta-hydrolase fold enzymes.

Authors:  Polytimi S Dimitriou; Alexander I Denesyuk; Toru Nakayama; Mark S Johnson; Konstantin Denessiouk
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5.  A Novel Subfamily Esterase with a Homoserine Transacetylase-like Fold but No Transferase Activity.

Authors:  Ping-Yi Li; Qiong-Qiong Yao; Peng Wang; Yi Zhang; Yue Li; Yan-Qi Zhang; Jie Hao; Bai-Cheng Zhou; Xiu-Lan Chen; Mei Shi; Yu-Zhong Zhang; Xi-Ying Zhang
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6.  The functional G143E variant of carboxylesterase 1 is associated with increased clopidogrel active metabolite levels and greater clopidogrel response.

Authors:  Joshua P Lewis; Richard B Horenstein; Kathleen Ryan; Jeffrey R O'Connell; Quince Gibson; Braxton D Mitchell; Keith Tanner; Sumbul Chai; Kevin P Bliden; Udaya S Tantry; Cody J Peer; William D Figg; Shawn D Spencer; Michael A Pacanowski; Paul A Gurbel; Alan R Shuldiner
Journal:  Pharmacogenet Genomics       Date:  2013-01       Impact factor: 2.089

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8.  Determination of Picomolar Concentrations of Paraoxon in Human Urine by Fluorescence-Based Enzymatic Assay.

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9.  A Novel Carboxylesterase Derived from a Compost Metagenome Exhibiting High Stability and Activity towards High Salinity.

Authors:  Mingji Lu; Rolf Daniel
Journal:  Genes (Basel)       Date:  2021-01-19       Impact factor: 4.096

10.  The Structure of a Novel Thermophilic Esterase from the Planctomycetes Species, Thermogutta terrifontis Reveals an Open Active Site Due to a Minimal 'Cap' Domain.

Authors:  Christopher Sayer; Zalan Szabo; Michail N Isupov; Colin Ingham; Jennifer A Littlechild
Journal:  Front Microbiol       Date:  2015-11-23       Impact factor: 5.640

  10 in total

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