Literature DB >> 18075765

Molecular electronegativity distance vector model for the prediction of bioconcentration factors in fish.

Shu-Shen Liu1, Li-Tang Qin, Hai-Ling Liu, Da-Qiang Yin.   

Abstract

Molecular electronegativity distance vector (MEDV) derived directly from the molecular topological structures was used to describe the structures of 122 nonionic organic compounds (NOCs) and a quantitative relationship between the MEDV descriptors and the bioconcentration factors (BCF) of NOCs in fish was developed using the variable selection and modeling based on prediction (VSMP). It was found that some main structural factors influencing the BCFs of NOCs are the substructures expressed by four atomic types of nos. 2, 3, 5, and 13, i.e., atom groups -CH(2)- or =CH-, -CH< or =C<, -NH(2), and -Cl or -Br where the former two groups exist in the molecular skeleton of NOC and the latter three groups are related closely to the substituting groups on a benzene ring. The best 5-variable model, with the correlation coefficient (r(2)) of 0.9500 and the leave-one-out cross-validation correlation coefficient (q(2)) of 0.9428, was built by multiple linear regressions, which shows a good estimation ability and stability. A predictive power for the external samples was tested by the model from the training set of 80 NOCs and the predictive correlation coefficient (u(2)) for the 42 external samples in the test set was 0.9028.

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Year:  2007        PMID: 18075765     DOI: 10.1007/s00894-007-0255-y

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  16 in total

1.  Estimation of bioconcentration factors of nonionic organic compounds in fish by molecular connectivity indices and polarity correction factors.

Authors:  X Lu; S Tao; H Hu; R W Dawson
Journal:  Chemosphere       Date:  2000-11       Impact factor: 7.086

2.  Development of the fragment constant method for estimating the partition coefficients of nonionic organic mixtures.

Authors:  Z Lin; H Yu; S Gao; J Cheng; L Wang
Journal:  Arch Environ Contam Toxicol       Date:  2001-10       Impact factor: 2.804

3.  An electrotopological-state index for atoms in molecules.

Authors:  L B Kier; L H Hall
Journal:  Pharm Res       Date:  1990-08       Impact factor: 4.200

4.  QSAR study on bioconcentration factor (BCF) of polyhalogented biphenyls using the PI index.

Authors:  Padmakar V Khadikar; Shalini Singh; Dheeraj Mandloi; Sheela Joshi; Amrit V Bajaj
Journal:  Bioorg Med Chem       Date:  2003-11-17       Impact factor: 3.641

5.  VSMP: a novel variable selection and modeling method based on the prediction.

Authors:  Shu-Shen Liu; Hai-Ling Liu; Chun-Sheng Yin; Lian-Sheng Wang
Journal:  J Chem Inf Comput Sci       Date:  2003 May-Jun

6.  QSPR study on the bioconcentration factors of nonionic organic compounds in fish by characteristic root index and semiempirical molecular descriptors.

Authors:  Melek Türker Saçan; Safiye Sag Erdem; Gül Altinbas Ozpinar; Isil Akmehmet Balcioglu
Journal:  J Chem Inf Comput Sci       Date:  2004 May-Jun

7.  The accurate QSPR models to predict the bioconcentration factors of nonionic organic compounds based on the heuristic method and support vector machine.

Authors:  Huanxiang Liu; Xiaojun Yao; Ruisheng Zhang; Mancang Liu; Zhide Hu; Botao Fan
Journal:  Chemosphere       Date:  2005-10-14       Impact factor: 7.086

8.  QSPR of the bioconcentration factors of non-ionic organic compounds in fish using extended topochemical atom (ETA) indices.

Authors:  K Roy; I Sanyal; P P Roy
Journal:  SAR QSAR Environ Res       Date:  2006-12       Impact factor: 3.000

9.  Modeling the bioconcentration factors and bioaccumulation factors of polychlorinated biphenyls with posetic quantitative super-structure/activity relationships (QSSAR).

Authors:  Teodora Ivanciuc; Ovidiu Ivanciuc; Douglas J Klein
Journal:  Mol Divers       Date:  2006-05-19       Impact factor: 2.943

10.  Prediction of chromatographic relative retention time of polychlorinated biphenyls from the molecular electronegativity distance vector.

Authors:  Shu-Shen Liu; Yan Liu; Da-Qian Yin; Xiao-Dong Wang; Lian-Sheng Wang
Journal:  J Sep Sci       Date:  2006-02       Impact factor: 3.645

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  2 in total

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Authors:  Li-Tang Qin; Shu-Shen Liu; Hai-Ling Liu
Journal:  Mol Divers       Date:  2009-04-15       Impact factor: 2.943

2.  Ratio of cord to maternal serum PCB concentrations in relation to their congener-specific physicochemical properties.

Authors:  Kinga Lancz; Lubica Murínová; Henrieta Patayová; Beata Drobná; Soňa Wimmerová; Eva Sovčíková; Ján Kováč; Dana Farkašová; Irva Hertz-Picciotto; Todd A Jusko; Tomáš Trnovec
Journal:  Int J Hyg Environ Health       Date:  2014-09-06       Impact factor: 5.840

  2 in total

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