Literature DB >> 18066080

Structural basis for the coevolution of a viral RNA-protein complex.

Jeffrey A Chao1, Yury Patskovsky, Steven C Almo, Robert H Singer.   

Abstract

The cocrystal structure of the PP7 bacteriophage coat protein in complex with its translational operator identifies a distinct mode of sequence-specific RNA recognition when compared to the well-characterized MS2 coat protein-RNA complex. The structure reveals the molecular basis of the PP7 coat protein's ability to selectively bind its cognate RNA, and it demonstrates that the conserved beta-sheet surface is a flexible architecture that can evolve to recognize diverse RNA hairpins.

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Year:  2007        PMID: 18066080      PMCID: PMC3152963          DOI: 10.1038/nsmb1327

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  19 in total

1.  RNA recognition site of PP7 coat protein.

Authors:  Francis Lim; David S Peabody
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

2.  Purification of RNA and RNA-protein complexes by an R17 coat protein affinity method.

Authors:  V J Bardwell; M Wickens
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

3.  Crystal structure of an RNA bacteriophage coat protein-operator complex.

Authors:  K Valegård; J B Murray; P G Stockley; N J Stonehouse; L Liljas
Journal:  Nature       Date:  1994-10-13       Impact factor: 49.962

4.  The RNA-binding site of bacteriophage Qbeta coat protein.

Authors:  F Lim; M Spingola; D S Peabody
Journal:  J Biol Chem       Date:  1996-12-13       Impact factor: 5.157

5.  The three-dimensional structure of the bacterial virus MS2.

Authors:  K Valegård; L Liljas; K Fridborg; T Unge
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

Review 6.  Translation of the genome of a ribonucleic acid bacteriophage.

Authors:  M Kozak; D Nathans
Journal:  Bacteriol Rev       Date:  1972-03

7.  Role of a bulged A residue in a specific RNA-protein interaction.

Authors:  H N Wu; O C Uhlenbeck
Journal:  Biochemistry       Date:  1987-12-15       Impact factor: 3.162

8.  Nucleotide sequence of a single-stranded RNA phage from Pseudomonas aeruginosa: kinship to coliphages and conservation of regulatory RNA structures.

Authors:  R C Olsthoorn; G Garde; T Dayhuff; J F Atkins; J Van Duin
Journal:  Virology       Date:  1995-01-10       Impact factor: 3.616

9.  The crystal structure of bacteriophage Q beta at 3.5 A resolution.

Authors:  R Golmohammadi; K Fridborg; M Bundule; K Valegård; L Liljas
Journal:  Structure       Date:  1996-05-15       Impact factor: 5.006

10.  Crystal structure of the MS2 coat protein dimer: implications for RNA binding and virus assembly.

Authors:  C Z Ni; R Syed; R Kodandapani; J Wickersham; D S Peabody; K R Ely
Journal:  Structure       Date:  1995-03-15       Impact factor: 5.006

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  97 in total

1.  Real-time observation of transcription initiation and elongation on an endogenous yeast gene.

Authors:  Daniel R Larson; Daniel Zenklusen; Bin Wu; Jeffrey A Chao; Robert H Singer
Journal:  Science       Date:  2011-04-22       Impact factor: 47.728

2.  Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation.

Authors:  Jonathan Corbi; Julien Y Dutheil; Catherine Damerval; Maud I Tenaillon; Domenica Manicacci
Journal:  Ann Bot       Date:  2012-02-02       Impact factor: 4.357

3.  An enhanced H/ACA RNP assembly mechanism for human telomerase RNA.

Authors:  Emily D Egan; Kathleen Collins
Journal:  Mol Cell Biol       Date:  2012-04-23       Impact factor: 4.272

4.  Single-mRNA counting using fluorescent in situ hybridization in budding yeast.

Authors:  Tatjana Trcek; Jeffrey A Chao; Daniel R Larson; Hye Yoon Park; Daniel Zenklusen; Shailesh M Shenoy; Robert H Singer
Journal:  Nat Protoc       Date:  2012-02-02       Impact factor: 13.491

Review 5.  Nucleic acid packaging in viruses.

Authors:  Jeffrey A Speir; John E Johnson
Journal:  Curr Opin Struct Biol       Date:  2012-01-23       Impact factor: 6.809

Review 6.  Insights into the structural basis of RNA recognition by STAR domain proteins.

Authors:  Sean P Ryder; Francesca Massi
Journal:  Adv Exp Med Biol       Date:  2010       Impact factor: 2.622

Review 7.  Quantitative approaches to monitor protein-nucleic acid interactions using fluorescent probes.

Authors:  John M Pagano; Carina C Clingman; Sean P Ryder
Journal:  RNA       Date:  2010-11-22       Impact factor: 4.942

8.  Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility.

Authors:  Diana A Stavreva; David A Garcia; Gregory Fettweis; Prabhakar R Gudla; George F Zaki; Vikas Soni; Andrew McGowan; Geneva Williams; Anh Huynh; Murali Palangat; R Louis Schiltz; Thomas A Johnson; Diego M Presman; Matthew L Ferguson; Gianluca Pegoraro; Arpita Upadhyaya; Gordon L Hager
Journal:  Mol Cell       Date:  2019-08-14       Impact factor: 17.970

Review 9.  Tracking RNA with light: selection, structure, and design of fluorescence turn-on RNA aptamers.

Authors:  Robert J Trachman; Adrian R Ferré-D'Amaré
Journal:  Q Rev Biophys       Date:  2019-08-19       Impact factor: 5.318

10.  Combined use of MS2 and PP7 coat fusions shows that TIA-1 dominates hnRNP A1 for K-SAM exon splicing control.

Authors:  Marie-Claude Gesnel; Fabienne Del Gatto-Konczak; Richard Breathnach
Journal:  J Biomed Biotechnol       Date:  2010-01-14
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