Literature DB >> 18062772

Getting to grips with the plant metabolic network.

Lee J Sweetlove1, David Fell, Alisdair R Fernie.   

Abstract

Research into plant metabolism has a long history, and analytical approaches of ever-increasing breadth and sophistication have been brought to bear. We now have access to vast repositories of data concerning enzymology and regulatory features of enzymes, as well as large-scale datasets containing profiling information of transcripts, protein and metabolite levels. Nevertheless, despite this wealth of data, we remain some way off from being able to rationally engineer plant metabolism or even to predict metabolic responses. Within the past 18 months, rapid progress has been made, with several highly informative plant network interrogations being discussed in the literature. In the present review we will appraise the current state of the art regarding plant metabolic network analysis and attempt to outline what the necessary steps are in order to further our understanding of network regulation.

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Year:  2008        PMID: 18062772     DOI: 10.1042/BJ20071115

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  31 in total

1.  Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function.

Authors:  Takayuki Tohge; Alisdair R Fernie
Journal:  Nat Protoc       Date:  2010-06-10       Impact factor: 13.491

2.  Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation.

Authors:  Takayuki Tohge; Federico Scossa; Alisdair R Fernie
Journal:  Plant Physiol       Date:  2015-09-14       Impact factor: 8.340

Review 3.  Metabolic networks: how to identify key components in the regulation of metabolism and growth.

Authors:  Mark Stitt; Ronan Sulpice; Joost Keurentjes
Journal:  Plant Physiol       Date:  2009-12-11       Impact factor: 8.340

Review 4.  Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering.

Authors:  Kambiz Baghalian; Mohammad-Reza Hajirezaei; Falk Schreiber
Journal:  Plant Cell       Date:  2014-10-24       Impact factor: 11.277

5.  Metabolic network fluxes in heterotrophic Arabidopsis cells: stability of the flux distribution under different oxygenation conditions.

Authors:  Thomas C R Williams; Laurent Miguet; Shyam K Masakapalli; Nicholas J Kruger; Lee J Sweetlove; R George Ratcliffe
Journal:  Plant Physiol       Date:  2008-07-30       Impact factor: 8.340

6.  A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis.

Authors:  Zheng Li; Nooshin Omranian; Lutz Neumetzler; Ting Wang; Thomas Herter; Bjoern Usadel; Taku Demura; Patrick Giavalisco; Zoran Nikoloski; Staffan Persson
Journal:  Plant Physiol       Date:  2016-08-26       Impact factor: 8.340

7.  Genes encoding hub and bottleneck enzymes of the Arabidopsis metabolic network preferentially retain homeologs through whole genome duplication.

Authors:  Xudong Wu; Xiaoquan Qi
Journal:  BMC Evol Biol       Date:  2010-05-18       Impact factor: 3.260

8.  The role of malate in plant homeostasis.

Authors:  Iris Finkemeier; Lee J Sweetlove
Journal:  F1000 Biol Rep       Date:  2009-06-29

9.  Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.

Authors:  Karin Radrich; Yoshimasa Tsuruoka; Paul Dobson; Albert Gevorgyan; Neil Swainston; Gino Baart; Jean-Marc Schwartz
Journal:  BMC Syst Biol       Date:  2010-08-16

Review 10.  Reactive oxygen species generation and signaling in plants.

Authors:  Baishnab Charan Tripathy; Ralf Oelmüller
Journal:  Plant Signal Behav       Date:  2012-10-16
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