Literature DB >> 18059368

Nucleosome destabilization in the epigenetic regulation of gene expression.

Steven Henikoff1.   

Abstract

Assembly, mobilization and disassembly of nucleosomes can influence the regulation of gene expression and other processes that act on eukaryotic DNA. Distinct nucleosome-assembly pathways deposit dimeric subunits behind the replication fork or at sites of active processes that mobilize pre-existing nucleosomes. Replication-coupled nucleosome assembly appears to be the default process that maintains silent chromatin, counteracted by active processes that destabilize nucleosomes. Nucleosome stability is regulated by the combined effects of nucleosome-positioning sequences, histone chaperones, ATP-dependent nucleosome remodellers, post-translational modifications and histone variants. Recent studies suggest that histone turnover helps to maintain continuous access to sequence-specific DNA-binding proteins that regulate epigenetic inheritance, providing a dynamic alternative to histone-marking models for the propagation of active chromatin.

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Year:  2008        PMID: 18059368     DOI: 10.1038/nrg2206

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  204 in total

Review 1.  Histone-modifying enzymes, histone modifications and histone chaperones in nucleosome assembly: Lessons learned from Rtt109 histone acetyltransferases.

Authors:  Jayme L Dahlin; Xiaoyue Chen; Michael A Walters; Zhiguo Zhang
Journal:  Crit Rev Biochem Mol Biol       Date:  2014-11-03       Impact factor: 8.250

2.  Dynamic nature of transcriptional regulation of nuclear receptor target genes in the context of chromatin organization.

Authors:  Sami Väisänen; Juha Matilainen; Carsten Carlberg
Journal:  Dermatoendocrinol       Date:  2011-07-01

3.  Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.

Authors:  Yuri M Moshkin; Gillian E Chalkley; Tsung Wai Kan; B Ashok Reddy; Zeliha Ozgur; Wilfred F J van Ijcken; Dick H W Dekkers; Jeroen A Demmers; Andrew A Travers; C Peter Verrijzer
Journal:  Mol Cell Biol       Date:  2011-11-28       Impact factor: 4.272

4.  Protein arginine methyltransferase 7 regulates cellular response to DNA damage by methylating promoter histones H2A and H4 of the polymerase δ catalytic subunit gene, POLD1.

Authors:  Vrajesh Karkhanis; Li Wang; Sookil Tae; Yu-Jie Hu; Anthony N Imbalzano; Saïd Sif
Journal:  J Biol Chem       Date:  2012-07-02       Impact factor: 5.157

5.  Charge state of the globular histone core controls stability of the nucleosome.

Authors:  Andrew T Fenley; David A Adams; Alexey V Onufriev
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

6.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

7.  Epigenomics: Catching nucleosomes in action.

Authors:  Mary Muers
Journal:  Nat Rev Genet       Date:  2010-07       Impact factor: 53.242

Review 8.  Histone variants in metazoan development.

Authors:  Laura A Banaszynski; C David Allis; Peter W Lewis
Journal:  Dev Cell       Date:  2010-11-16       Impact factor: 12.270

Review 9.  Pioneer factors and their in vitro identification methods.

Authors:  Xinyang Yu; Michael J Buck
Journal:  Mol Genet Genomics       Date:  2020-04-15       Impact factor: 3.291

Review 10.  Alcohol effects on the epigenome in the germline: Role in the inheritance of alcohol-related pathology.

Authors:  Lucy G Chastain; Dipak K Sarkar
Journal:  Alcohol       Date:  2017-03-06       Impact factor: 2.405

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