Literature DB >> 18050428

Transcriptional regulation.

Peter G Okkema1, Michael Krause.   

Abstract

The regulation of transcription in C. elegans shares many similarities to transcription in other organisms. The details of how specific transcription factors bind to target promoters and act as either activators or repressors are still being examined in many cases, but an increasing number of factors and their binding sites are being characterized. This chapter reviews the general concepts that have emerged with regards to promoter function in C. elegans. Included are the methods that have been successfully employed as well as limitations encountered to date. Specific cis-acting promoter elements from myo-2, hlh-1 and lin-26 are discussed as examples of complex promoters regulated by multiple sequence elements. In addition, examples of organ-, tissue-, and cell type-specific mechanisms for generating spatial specificity in gene expression are discussed.

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Year:  2005        PMID: 18050428      PMCID: PMC4781111          DOI: 10.1895/wormbook.1.45.1

Source DB:  PubMed          Journal:  WormBook        ISSN: 1551-8507


  18 in total

1.  Identification of a dopaminergic enhancer indicates complexity in vertebrate dopamine neuron phenotype specification.

Authors:  Esther Fujimoto; Tamara J Stevenson; Chi-Bin Chien; Joshua L Bonkowsky
Journal:  Dev Biol       Date:  2011-01-27       Impact factor: 3.582

Review 2.  Transcriptional regulation of gene expression in C. elegans.

Authors:  Valerie Reinke; Michael Krause; Peter Okkema
Journal:  WormBook       Date:  2013-06-04

3.  A "latent niche" mechanism for tumor initiation.

Authors:  Marie McGovern; Roumen Voutev; John Maciejowski; Ann K Corsi; E Jane Albert Hubbard
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-29       Impact factor: 11.205

4.  Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans.

Authors:  Wei Niu; Zhi John Lu; Mei Zhong; Mihail Sarov; John I Murray; Cathleen M Brdlik; Judith Janette; Chao Chen; Pedro Alves; Elicia Preston; Cindie Slightham; Lixia Jiang; Anthony A Hyman; Stuart K Kim; Robert H Waterston; Mark Gerstein; Michael Snyder; Valerie Reinke
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

Review 5.  Visualizing and quantifying molecular and cellular processes in Caenorhabditis elegans using light microscopy.

Authors:  Pavak Shah; Zhirong Bao; Ronen Zaidel-Bar
Journal:  Genetics       Date:  2022-07-30       Impact factor: 4.402

6.  The NK-2 class homeodomain factor CEH-51 and the T-box factor TBX-35 have overlapping function in C. elegans mesoderm development.

Authors:  Gina Broitman-Maduro; Melissa Owraghi; Wendy W K Hung; Steven Kuntz; Paul W Sternberg; Morris F Maduro
Journal:  Development       Date:  2009-07-15       Impact factor: 6.868

7.  Dynamic chromatin organization during foregut development mediated by the organ selector gene PHA-4/FoxA.

Authors:  Tala H I Fakhouri; Jeff Stevenson; Andrew D Chisholm; Susan E Mango
Journal:  PLoS Genet       Date:  2010-08-12       Impact factor: 5.917

8.  Characterization of the Caenorhabditis elegans Islet LIM-homeodomain ortholog, lim-7.

Authors:  Roumen Voutev; Ryan Keating; E Jane Albert Hubbard; Laura G Vallier
Journal:  FEBS Lett       Date:  2008-12-29       Impact factor: 4.124

9.  The polycomb complex protein mes-2/E(z) promotes the transition from developmental plasticity to differentiation in C. elegans embryos.

Authors:  T Yuzyuk; T H I Fakhouri; J Kiefer; S E Mango
Journal:  Dev Cell       Date:  2009-05       Impact factor: 12.270

10.  The Caenorhabditis elegans THO complex is required for the mitotic cell cycle and development.

Authors:  Maikel Castellano-Pozo; Tatiana García-Muse; Andrés Aguilera
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

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