Literature DB >> 18047340

Subdiffraction imaging through the selective donut-mode depletion of thermally stable photoswitchable fluorophores: numerical analysis and application to the fluorescent protein Dronpa.

Peter Dedecker1, Jun-ichi Hotta, Cristina Flors, Michel Sliwa, Hiroshi Uji-i, Maarten B J Roeffaers, Ryoko Ando, Hideaki Mizuno, Atsushi Miyawaki, Johan Hofkens.   

Abstract

The fast and reversible on/off switching of the fluorescence emission of the GFP-like fluorescent protein Dronpa has attracted considerable interest for applications in subdiffraction imaging. In this paper we study the use of a donut-mode beam in combination with two more overlapping laser beams to increase the imaging resolution through selective switching to the nonfluorescent photoswitched state. We devise and run a series of numerical simulations to determine suitable photophysical parameters of prospective, thermally stable photoswitchable molecules, in terms of photoswitching quantum yields, fatigue resistance, and possible presence of transient nonfluorescent states. Many of our findings are applicable to other measurements that make use of donut beams, and these guidelines can be used in the synthesis and screening of novel photoswitchable compounds. We experimentally demonstrate the possibility of obtaining increased resolution by making use of the efficient and thermally stable Dronpa photoswitching, using equipment that is commonly available.

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Year:  2007        PMID: 18047340     DOI: 10.1021/ja076128z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution.

Authors:  E Hesper Rego; Lin Shao; John J Macklin; Lukman Winoto; Göran A Johansson; Nicholas Kamps-Hughes; Michael W Davidson; Mats G L Gustafsson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

2.  Widely accessible method for superresolution fluorescence imaging of living systems.

Authors:  Peter Dedecker; Gary C H Mo; Thomas Dertinger; Jin Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

3.  A structural basis for reversible photoswitching of absorbance spectra in red fluorescent protein rsTagRFP.

Authors:  Sergei Pletnev; Fedor V Subach; Zbigniew Dauter; Alexander Wlodawer; Vladislav V Verkhusha
Journal:  J Mol Biol       Date:  2012-01-30       Impact factor: 5.469

4.  Generation of monomeric reversibly switchable red fluorescent proteins for far-field fluorescence nanoscopy.

Authors:  Andre C Stiel; Martin Andresen; Hannes Bock; Michael Hilbert; Jessica Schilde; Andreas Schönle; Christian Eggeling; Alexander Egner; Stefan W Hell; Stefan Jakobs
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

5.  Microscopy and its focal switch.

Authors:  Stefan W Hell
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547

6.  Diffraction-unlimited all-optical imaging and writing with a photochromic GFP.

Authors:  Tim Grotjohann; Ilaria Testa; Marcel Leutenegger; Hannes Bock; Nicolai T Urban; Flavie Lavoie-Cardinal; Katrin I Willig; Christian Eggeling; Stefan Jakobs; Stefan W Hell
Journal:  Nature       Date:  2011-09-11       Impact factor: 49.962

Review 7.  Super-resolution microscopy approaches for live cell imaging.

Authors:  Antoine G Godin; Brahim Lounis; Laurent Cognet
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

Review 8.  Optical imaging of nanoscale cellular structures.

Authors:  Per Niklas Hedde; Gerd Ulrich Nienhaus
Journal:  Biophys Rev       Date:  2010-09-08

9.  Synchronously amplified fluorescence image recovery (SAFIRe).

Authors:  Chris I Richards; Jung-Cheng Hsiang; Robert M Dickson
Journal:  J Phys Chem B       Date:  2010-01-14       Impact factor: 2.991

10.  Optically modulated fluorophores for selective fluorescence signal recovery.

Authors:  Chris I Richards; Jung-Cheng Hsiang; Dulal Senapati; Sandeep Patel; Junhua Yu; Tom Vosch; Robert M Dickson
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

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