Literature DB >> 18045122

An updated unified pharmacophore model of the benzodiazepine binding site on gamma-aminobutyric acid(a) receptors: correlation with comparative models.

T Clayton1, J L Chen, M Ernst, L Richter, B A Cromer, C J Morton, H Ng, C C Kaczorowski, F J Helmstetter, R Furtmüller, G Ecker, M W Parker, W Sieghart, J M Cook.   

Abstract

A successful unified pharmacophore/receptor model which has guided the synthesis of subtype selective compounds is reviewed in light of recent developments both in ligand synthesis and structural studies of the binding site itself. The evaluation of experimental data in combination with a comparative model of the alpha1beta2gamma2 GABA(A) receptor leads to an orientation of the pharmacophore model within the Bz BS. Results not only are important for the rational design of selective ligands, but also for the identification and evaluation of possible roles which specific residues may have within the benzodiazepine binding pocket.

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Year:  2007        PMID: 18045122     DOI: 10.2174/092986707782360097

Source DB:  PubMed          Journal:  Curr Med Chem        ISSN: 0929-8673            Impact factor:   4.530


  27 in total

1.  Development of a two-step route to 3-PBC and βCCt, two agents active against alcohol self-administration in rodent and primate models.

Authors:  Ojas A Namjoshi; Angelica Gryboski; German O Fonseca; Michael L Van Linn; Zhi-jian Wang; Jeffrey R Deschamps; James M Cook
Journal:  J Org Chem       Date:  2011-05-04       Impact factor: 4.354

2.  Allosteric modulation of GABA(A) receptor subtypes:effects on visual recognition and visuospatial working memory in rhesus monkeys [corrected].

Authors:  Paul L Soto; Nancy A Ator; Sundari K Rallapalli; Poonam Biawat; Terry Clayton; James M Cook; Michael R Weed
Journal:  Neuropsychopharmacology       Date:  2013-05-31       Impact factor: 7.853

3.  Deciphering the binding mode of Zolpidem to GABA(A) α₁ receptor - insights from molecular dynamics simulation.

Authors:  R S K Vijayan; Dhananjay Bhattacharyya; Nanda Ghoshal
Journal:  J Mol Model       Date:  2011-07-07       Impact factor: 1.810

4.  Further evaluation of the potential anxiolytic activity of imidazo[1,5-a][1,4]diazepin agents selective for α2/3-containing GABAA receptors.

Authors:  J M Witkin; R Cerne; M Wakulchik; J S; S D Gleason; T M Jones; G Li; L A Arnold; J-X Li; J M Schkeryantz; K R Methuku; J M Cook; M M Poe
Journal:  Pharmacol Biochem Behav       Date:  2017-04-22       Impact factor: 3.533

5.  Melanoma Cell Intrinsic GABAA Receptor Enhancement Potentiates Radiation and Immune Checkpoint Inhibitor Response by Promoting Direct and T Cell-Mediated Antitumor Activity.

Authors:  Daniel A Pomeranz Krummel; Tahseen H Nasti; Milota Kaluzova; Laura Kallay; Debanjan Bhattacharya; Johannes C Melms; Benjamin Izar; Maxwell Xu; Andre Burnham; Taukir Ahmed; Guanguan Li; David Lawson; Jeanne Kowalski; Yichun Cao; Jeffrey M Switchenko; Dan Ionascu; James M Cook; Mario Medvedovic; Andrew Jenkins; Mohammad K Khan; Soma Sengupta
Journal:  Int J Radiat Oncol Biol Phys       Date:  2020-10-24       Impact factor: 7.038

6.  Small molecule structure correctors abolish detrimental effects of apolipoprotein E4 in cultured neurons.

Authors:  Hung-Kai Chen; Zhaoping Liu; Anke Meyer-Franke; Jens Brodbeck; Rene D Miranda; James G McGuire; Michael A Pleiss; Zhong-Sheng Ji; Maureen E Balestra; David W Walker; Qin Xu; Dah-eun Jeong; Madhu S Budamagunta; John C Voss; Stephen B Freedman; Karl H Weisgraber; Yadong Huang; Robert W Mahley
Journal:  J Biol Chem       Date:  2011-12-12       Impact factor: 5.157

7.  Design, synthesis, and subtype selectivity of 3,6-disubstituted β-carbolines at Bz/GABA(A)ergic receptors. SAR and studies directed toward agents for treatment of alcohol abuse.

Authors:  Wenyuan Yin; Samarpan Majumder; Terry Clayton; Steven Petrou; Michael L VanLinn; Ojas A Namjoshi; Chunrong Ma; Brett A Cromer; Bryan L Roth; Donna M Platt; James M Cook
Journal:  Bioorg Med Chem       Date:  2010-09-29       Impact factor: 3.641

8.  Comparison of the relative propensities of isoamyl nitrite and sodium nitrite to ameliorate acute cyanide poisoning in mice and a novel antidotal effect arising from anesthetics.

Authors:  Leah K Cambal; Andrew C Weitz; Hui-Hua Li; Yang Zhang; Xi Zheng; Linda L Pearce; Jim Peterson
Journal:  Chem Res Toxicol       Date:  2013-04-19       Impact factor: 3.739

9.  An Improved Process for the Synthesis of 4H-Imidazo[1,5-a][1,4]benzodiazepines.

Authors:  Jie Yang; Yun Teng; Shamim Ara; Sundari Rallapalli; James M Cook
Journal:  Synthesis (Stuttg)       Date:  2009-03       Impact factor: 3.157

10.  Search for α3β₂/₃γ2 subtype selective ligands that are stable on human liver microsomes.

Authors:  Ojas A Namjoshi; Zhi-jian Wang; Sundari K Rallapalli; Edward Merle Johnson; Yun-Teng Johnson; Hanna Ng; Joachim Ramerstorfer; Zdravko Varagic; Werner Sieghart; Samarpan Majumder; Bryan L Roth; James K Rowlett; James M Cook
Journal:  Bioorg Med Chem       Date:  2012-11-15       Impact factor: 3.641

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