Literature DB >> 18045076

Yeast genomics and drug target identification.

Nikë Bharucha1, Anuj Kumar.   

Abstract

The budding yeast Saccharomyces cerevisiae is well recognized as a preferred eukaryote for the development of genomic technologies and approaches. Accordingly, a sizeable complement of genomic resources has been developed in yeast, and this genomic foundation is now informing a wide variety of disciplines. In particular, yeast genomic methodologies are gaining an expanding foothold in drug development studies, most notably as a preliminary tool towards drug target identification. In this review, we highlight many applications of yeast genomics in the identification of targeted genes and pathways of small molecules or therapeutic drugs. The applicability of genome-wide resources of yeast disruption and deletion mutants for drug-sensitivity/resistance screening is presented here, along with a summary of microarray technologies for drug-based transcriptional profiling and synthetic interaction mapping. Applications of protein-interaction traps for potential drug target identification are also considered. Collectively, this overview of yeast genomics emphasizes the growing intersection between high-throughput model organism biology and medicinal chemistry an intersection promising tangible advances for both academic and pharmaceutical fields alike.

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Year:  2007        PMID: 18045076     DOI: 10.2174/138620707782507340

Source DB:  PubMed          Journal:  Comb Chem High Throughput Screen        ISSN: 1386-2073            Impact factor:   1.339


  7 in total

1.  Noise reduction in genome-wide perturbation screens using linear mixed-effect models.

Authors:  Danni Yu; John Danku; Ivan Baxter; Sungjin Kim; Olena K Vatamaniuk; David E Salt; Olga Vitek
Journal:  Bioinformatics       Date:  2011-06-17       Impact factor: 6.937

2.  Target identification using drug affinity responsive target stability (DARTS).

Authors:  Brett Lomenick; Rui Hao; Nao Jonai; Randall M Chin; Mariam Aghajan; Sarah Warburton; Jianing Wang; Raymond P Wu; Fernando Gomez; Joseph A Loo; James A Wohlschlegel; Thomas M Vondriska; Jerry Pelletier; Harvey R Herschman; Jon Clardy; Catherine F Clarke; Jing Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-07       Impact factor: 11.205

3.  Molecular characterization of propolis-induced cell death in Saccharomyces cerevisiae.

Authors:  Patrícia Alves de Castro; Marcela Savoldi; Diego Bonatto; Mário Henrique Barros; Maria Helena S Goldman; Andresa A Berretta; Gustavo Henrique Goldman
Journal:  Eukaryot Cell       Date:  2010-12-30

4.  Extraction of RNA from Ca-alginate-encapsulated yeast for transcriptional profiling.

Authors:  Arthur L Kruckeberg; Saisubramanian Nagarajan; Kate McInnerney; Frank Rosenzweig
Journal:  Anal Biochem       Date:  2009-05-03       Impact factor: 3.365

Review 5.  Mutant power: using mutant allele collections for yeast functional genomics.

Authors:  Kaitlyn L Norman; Anuj Kumar
Journal:  Brief Funct Genomics       Date:  2015-10-09       Impact factor: 4.241

6.  Cisplatin cytotoxicity is dependent on mitochondrial respiration in Saccharomyces cerevisiae.

Authors:  Santhi Priya Inapurapu; Karunakar Rao Kudle; Sreedhar Bodiga; Vijaya Lakshmi Bodiga
Journal:  Iran J Basic Med Sci       Date:  2017-01       Impact factor: 2.699

Review 7.  Omics methods for probing the mode of action of natural and synthetic phytotoxins.

Authors:  Stephen O Duke; Joanna Bajsa; Zhiqiang Pan
Journal:  J Chem Ecol       Date:  2013-01-27       Impact factor: 2.626

  7 in total

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