Literature DB >> 18042442

Comparison of ESI-MS interfaces for the analysis of UV-crosslinked peptide-nucleic acid complexes.

Philip R Gafken1, Catalin E Doneanu, Samuel E Bennett, Douglas F Barofsky.   

Abstract

In this report, the effectiveness of high performance liquid chromatography (HPLC) in conjunction with electrospray ionization mass spectrometry (ESI-MS) is examined as a tool for identifying the sites of crosslinking in a protein that has been photoreacted with a non-photolabeled oligonucleotide. ESI-MS and MALDI-MS analyses preceded by off-line microflow and nanoflow HPLC, on-line microflow HPLC/ESI, and on-line nanoflow HPLC/ESI interfaces were performed in order to determine their relative effectiveness in separating mixtures of nucleopeptides and identifying sites of crosslinking on the individual components. The characteristics of these four techniques as well as possibilities for improving the analysis of nucleopeptides by ESI-MS are compared and discussed.

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Year:  2007        PMID: 18042442      PMCID: PMC2238692          DOI: 10.1016/j.jchromb.2007.09.029

Source DB:  PubMed          Journal:  J Chromatogr B Analyt Technol Biomed Life Sci        ISSN: 1570-0232            Impact factor:   3.205


  18 in total

1.  Mapping of the 5'-2-deoxyribose-5-phosphate lyase active site in DNA polymerase beta by mass spectrometry.

Authors:  L J Deterding; R Prasad; G P Mullen; S H Wilson; K B Tomer
Journal:  J Biol Chem       Date:  2000-04-07       Impact factor: 5.157

2.  Characterization of a cross-linked DNA-endonuclease VIII repair complex by electrospray ionization mass spectrometry.

Authors:  R A Rieger; M M McTigue; J H Kycia; S E Gerchman; A P Grollman; C R Iden
Journal:  J Am Soc Mass Spectrom       Date:  2000-06       Impact factor: 3.109

3.  Mass spectral characterization of a protein-nucleic acid photocrosslink.

Authors:  M C Golden; K A Resing; B D Collins; M C Willis; T H Koch
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

4.  An exponential dilution gradient system for nanoscale liquid chromatography in combination with MALDI or nano-ESI mass spectrometry for proteolytic digests.

Authors:  C E Doneanu; D A Griffin; E L Barofsky; D F Barofsky
Journal:  J Am Soc Mass Spectrom       Date:  2001-11       Impact factor: 3.109

5.  Identification and characterization of posttranslational modifications of proteins by MALDI ion trap mass spectrometry.

Authors:  J Qin; B T Chait
Journal:  Anal Chem       Date:  1997-10-01       Impact factor: 6.986

6.  Analytical properties of the nanoelectrospray ion source.

Authors:  M Wilm; M Mann
Journal:  Anal Chem       Date:  1996-01-01       Impact factor: 6.986

7.  Characterization of peptide-oligonucleotide heteroconjugates by mass spectrometry.

Authors:  O N Jensen; S Kulkarni; J V Aldrich; D F Barofsky
Journal:  Nucleic Acids Res       Date:  1996-10-01       Impact factor: 16.971

8.  UV-catalyzed cross-linking of Escherichia coli uracil-DNA glycosylase to DNA. Identification of amino acid residues in the single-stranded DNA binding site.

Authors:  S E Bennett; O N Jensen; D F Barofsky; D W Mosbaugh
Journal:  J Biol Chem       Date:  1994-08-26       Impact factor: 5.157

9.  Mass spectrometric analysis of a UV-cross-linked protein-DNA complex: tryptophans 54 and 88 of E. coli SSB cross-link to DNA.

Authors:  H Steen; J Petersen; M Mann; O N Jensen
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

10.  Identification of specific carboxyl groups on uracil-DNA glycosylase inhibitor protein that are required for activity.

Authors:  R J Sanderson; D W Mosbaugh
Journal:  J Biol Chem       Date:  1996-11-15       Impact factor: 5.157

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