Literature DB >> 18037894

Electronic structure of single DNA molecules resolved by transverse scanning tunnelling spectroscopy.

Errez Shapir1, Hezy Cohen, Arrigo Calzolari, Carlo Cavazzoni, Dmitry A Ryndyk, Gianaurelio Cuniberti, Alexander Kotlyar, Rosa Di Felice, Danny Porath.   

Abstract

Attempts to resolve the energy-level structure of single DNA molecules by scanning tunnelling spectroscopy span over the past two decades, owing to the unique ability of this technique to probe the local density of states of objects deposited on a surface. Nevertheless, success was hindered by extreme technical difficulties in stable deposition and reproducibility. Here, by using scanning tunnelling spectroscopy at cryogenic temperature, we disclose the energy spectrum of poly(G)-poly(C) DNA molecules deposited on gold. The tunnelling current-voltage (I-V) characteristics and their derivative (dI/dV-V) curves at 78 K exhibit a clear gap and a peak structure around the gap. Limited fluctuations in the I-V curves are observed and statistically characterized. By means of ab initio density functional theory calculations, the character of the observed peaks is generally assigned to groups of orbitals originating from the different molecular components, namely the nucleobases, the backbone and the counterions.

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Year:  2007        PMID: 18037894     DOI: 10.1038/nmat2060

Source DB:  PubMed          Journal:  Nat Mater        ISSN: 1476-1122            Impact factor:   43.841


  15 in total

Review 1.  Recognition tunneling.

Authors:  Stuart Lindsay; Jin He; Otto Sankey; Prokop Hapala; Pavel Jelinek; Peiming Zhang; Shuai Chang; Shuo Huang
Journal:  Nanotechnology       Date:  2010-06-04       Impact factor: 3.874

2.  Organic structure determination using atomic-resolution scanning probe microscopy.

Authors:  Leo Gross; Fabian Mohn; Nikolaj Moll; Gerhard Meyer; Rainer Ebel; Wael M Abdel-Mageed; Marcel Jaspars
Journal:  Nat Chem       Date:  2010-08-01       Impact factor: 24.427

3.  Label-free detection of missense mutations and methylation differences in the p53 gene using optically diffracting hydrogels.

Authors:  Kelsey I MacConaghy; Duncan M Chadly; Mark P Stoykovich; Joel L Kaar
Journal:  Analyst       Date:  2015-09-21       Impact factor: 4.616

4.  Scanning tunnelling microscopy: a DNA sequence scanned.

Authors:  Danny Porath
Journal:  Nat Nanotechnol       Date:  2009-08       Impact factor: 39.213

5.  Partial sequencing of a single DNA molecule with a scanning tunnelling microscope.

Authors:  Hiroyuki Tanaka; Tomoji Kawai
Journal:  Nat Nanotechnol       Date:  2009-07-05       Impact factor: 39.213

6.  Effect of noise on DNA sequencing via transverse electronic transport.

Authors:  Matt Krems; Michael Zwolak; Yuriy V Pershin; Massimiliano Di Ventra
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

7.  Aviram-Ratner rectifying mechanism for DNA base-pair sequencing through graphene nanogaps.

Authors:  Luis A Agapito; Jacob Gayles; Christian Wolowiec; Nicholas Kioussis
Journal:  Nanotechnology       Date:  2012-03-14       Impact factor: 3.874

8.  Transverse tunneling through DNA hydrogen bonded to an electrode.

Authors:  Jin He; Lisha Lin; Peiming Zhang; Quinn Spadola; Zhiqun Xi; Qiang Fu; Stuart Lindsay
Journal:  Nano Lett       Date:  2008-07-29       Impact factor: 11.189

9.  Effects of G-Quadruplex Topology on Electronic Transfer Integrals.

Authors:  Wenming Sun; Daniele Varsano; Rosa Di Felice
Journal:  Nanomaterials (Basel)       Date:  2016-10-15       Impact factor: 5.076

10.  DNA/RNA transverse current sequencing: intrinsic structural noise from neighboring bases.

Authors:  Jose R Alvarez; Dmitry Skachkov; Steven E Massey; Alan Kalitsov; Julian P Velev
Journal:  Front Genet       Date:  2015-06-19       Impact factor: 4.599

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