| Literature DB >> 18036208 |
Marko Cukjati1, Tomaz Vaupotic, Ruth Rupreht, Vladka Curin-Serbec.
Abstract
BACKGROUND: Hereditary hemochromatosis (HH) is a common genetic disease characterized by excessive iron overload that leads to multi-organ failure. Although the most prevalent genotype in HH is homozygosity for C282Y mutation of the HFE gene, two additional mutations, H63D and S65C, appear to be associated with a milder form of HH. The aim of this study was to develop a high-throughput assay for HFE mutations screening based on TaqMan technology and to determine the frequencies of HFE mutations in the Slovenian population.Entities:
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Year: 2007 PMID: 18036208 PMCID: PMC2253505 DOI: 10.1186/1471-2350-8-69
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1Validation of the real-time PCR assay for the 193A→T (S65C) mutation detection. (A) A multicomponent real-time amplification plots created by the SDS software. The genotypes are indicated with bold. The CT values of individual probes for all genotypes are presented. Curves in the plots correspond to the indicated fluorophores or water (see the legend); ROX, internal reference dye; mse, mean squared error; NTC, no-template control. (B) End-point fluorescence detection is shown by the scattered diagram. Clustering of genotypes is based on the relative fluorescence from each well on 96-well plate. The expected area for 193 mutant homozygote samples clustering is indicated by red circle.
Genotype frequencies of H63D, S65C and C282Y mutations in HFE gene in Slovenian blood donors.
| -/- | -/- | -/- | 857 | 66.8 (64.2–69.4) |
| +/- | -/- | -/- | 260 | 20.3 (18.1–22.6) |
| -/- | -/- | +/- | 80 | 6.2 (5.0–7.7) |
| -/- | -/+ | -/- | 42 | 3.3 (2.4–4.5) |
| +/+ | -/- | -/- | 30 | 2.3 (1.6–3.4) |
| -/- | -/- | +/+ | 2 | 0.16 (0.03–0.63) |
| -/- | +/+ | -/- | 0 | - |
| +/- | -/- | +/- | 6 | 0.47 (0.19–1.07) |
| +/- | +/- | -/- | 2 | 0.16 (0.03–0.63) |
| -/- | +/- | +/- | 3 | 0.23 (0.06–0.74) |
The presence or absence of the indicated mutation is shown by + or -, respectively.
Allele frequencies of H63D, S65C and C282Y mutation in the HFE gene in Slovenian blood donors.
| 12.8 (11.5 – 14.2) | |
| 1.8 (1.4 – 2.5) | |
| 3.6 (3.0 – 4.5) |
Figure 2H63D, S65C and C282Y allele frequency distribution in 1282 blood donors among different Slovenian regions. A) Regional distribution of HFE polymorphisms. The regions, numbered from 1 to 11, are arranged from west to east, and marked on the map below. Average frequency for Slovenia is presented in the last column (total). In the region 9 H63D allele frequency is significant higher comparing to other regions (p = 0.005). (B) Geographic regions of Slovenia.
Comparison of allele frequencies of H63D, S65C and C282Y in the Slovenian population with other European populations
| Slovenia* | 1282 | ||||||
| Croatia* [11] | 200 | NS | NS | NS | |||
| Hungary [30] | 240 | NS | - | NSa | |||
| Italy – Modena [27] | 606 | NS | 0.015 | NS | |||
| Italy – Ossola [29] | 2100 | NS | - | < 0.001 | |||
| Bosnia and Herzegovina* [12] | 200 | NS | - | NS | |||
| Serbia and Montenegro* [26] | 318 | NS | NS | 0.012 | |||
| The Czech Republic* [9] | 481 | NS | NS | NS | |||
| Poland* [10] | 871 | 0.002 | - | NS | |||
| Germany [31] | 500 | NS | - | NS | |||
| Denmark [32] | 2501 | NS | - | < 0.001 | |||
| France [4] | 410 | NS | NS | < 0.001 | |||
| United Kingdom [21] | 10556 | < 0,001 | - | < 0.001 |
n, number of subjects examined; -, no data; NS not significant. The significance level (α) was set at 0.05.
a Number of examined subjects was 996.
*Population of Slavic origin