Literature DB >> 18032794

The glomerular transcriptome and a predicted protein-protein interaction network.

Liqun He1, Ying Sun, Minoru Takemoto, Jenny Norlin, Karl Tryggvason, Tore Samuelsson, Christer Betsholtz.   

Abstract

To increase our understanding of the molecular composition of the kidney glomerulus, we performed a meta-analysis of available glomerular transcriptional profiles made from mouse and man using five different methodologies. We generated a combined catalogue of glomerulus-enriched genes that emerged from these different sources and then used this to construct a predicted protein-protein interaction network in the glomerulus (GlomNet). The combined glomerulus-enriched gene catalogue provides the most comprehensive picture of the molecular composition of the glomerulus currently available, and GlomNet contributes an integrative systems biology approach to the understanding of glomerular signaling networks that operate during development, function, and disease.

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Year:  2007        PMID: 18032794      PMCID: PMC2396740          DOI: 10.1681/ASN.2007050588

Source DB:  PubMed          Journal:  J Am Soc Nephrol        ISSN: 1046-6673            Impact factor:   10.121


  35 in total

Review 1.  Unraveling the molecular make-up of the glomerular podocyte slit diaphragm.

Authors:  J Khoshnoodi; K Tryggvason
Journal:  Exp Nephrol       Date:  2001

2.  Mutations in ACTN4, encoding alpha-actinin-4, cause familial focal segmental glomerulosclerosis.

Authors:  J M Kaplan; S H Kim; K N North; H Rennke; L A Correia; H Q Tong; B J Mathis; J C Rodríguez-Pérez; P G Allen; A H Beggs; M R Pollak
Journal:  Nat Genet       Date:  2000-03       Impact factor: 38.330

3.  Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.

Authors:  Aaron Barsky; Jennifer L Gardy; Robert E W Hancock; Tamara Munzner
Journal:  Bioinformatics       Date:  2007-02-19       Impact factor: 6.937

4.  NPHS2, encoding the glomerular protein podocin, is mutated in autosomal recessive steroid-resistant nephrotic syndrome.

Authors:  N Boute; O Gribouval; S Roselli; F Benessy; H Lee; A Fuchshuber; K Dahan; M C Gubler; P Niaudet; C Antignac
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

5.  Proteinuria and perinatal lethality in mice lacking NEPH1, a novel protein with homology to NEPHRIN.

Authors:  D B Donoviel; D D Freed; H Vogel; D G Potter; E Hawkins; J P Barrish; B N Mathur; C A Turner; R Geske; C A Montgomery; M Starbuck; M Brandt; A Gupta; R Ramirez-Solis; B P Zambrowicz; D R Powell
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

6.  Podocin, a raft-associated component of the glomerular slit diaphragm, interacts with CD2AP and nephrin.

Authors:  K Schwarz; M Simons; J Reiser; M A Saleem; C Faul; W Kriz; A S Shaw; L B Holzman; P Mundel
Journal:  J Clin Invest       Date:  2001-12       Impact factor: 14.808

7.  Interaction with podocin facilitates nephrin signaling.

Authors:  T B Huber; M Kottgen; B Schilling; G Walz; T Benzing
Journal:  J Biol Chem       Date:  2001-09-18       Impact factor: 5.157

8.  Altered podocyte structure in GLEPP1 (Ptpro)-deficient mice associated with hypertension and low glomerular filtration rate.

Authors:  B L Wharram; M Goyal; P J Gillespie; J E Wiggins; D B Kershaw; L B Holzman; R C Dysko; T L Saunders; L C Samuelson; R C Wiggins
Journal:  J Clin Invest       Date:  2000-11       Impact factor: 14.808

9.  Pod1 is required in stromal cells for glomerulogenesis.

Authors:  Shiying Cui; Lois Schwartz; Susan E Quaggin
Journal:  Dev Dyn       Date:  2003-03       Impact factor: 3.780

10.  Anuria, omphalocele, and perinatal lethality in mice lacking the CD34-related protein podocalyxin.

Authors:  R Doyonnas; D B Kershaw; C Duhme; H Merkens; S Chelliah; T Graf; K M McNagny
Journal:  J Exp Med       Date:  2001-07-02       Impact factor: 14.307

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  16 in total

1.  Pericytes regulate the blood-brain barrier.

Authors:  Annika Armulik; Guillem Genové; Maarja Mäe; Maya H Nisancioglu; Elisabet Wallgard; Colin Niaudet; Liqun He; Jenny Norlin; Per Lindblom; Karin Strittmatter; Bengt R Johansson; Christer Betsholtz
Journal:  Nature       Date:  2010-10-13       Impact factor: 49.962

Review 2.  Understanding kidney disease: toward the integration of regulatory networks across species.

Authors:  Wenjun Ju; Frank C Brosius
Journal:  Semin Nephrol       Date:  2010-09       Impact factor: 5.299

Review 3.  Systems biology of kidney diseases.

Authors:  John Cijiang He; Peter Y Chuang; Avi Ma'ayan; Ravi Iyengar
Journal:  Kidney Int       Date:  2011-08-31       Impact factor: 10.612

4.  Optimization of RNA extraction from laser captured microdissected glomeruli from formalin-fixed paraffin-embedded mouse kidney samples for Nanostring analysis.

Authors:  Abigail Hay; Jean-Martin Lapointe; Arthur Lewis; Carol Moreno Quinn; Elena Miranda
Journal:  Histol Histopathol       Date:  2019-06-11       Impact factor: 2.303

5.  Glcci1 deficiency leads to proteinuria.

Authors:  Yukino Nishibori; Kan Katayama; Mataleena Parikka; Asmundur Oddsson; Masatoshi Nukui; Kjell Hultenby; Annika Wernerson; Bing He; Lwaki Ebarasi; Elisabeth Raschperger; Jenny Norlin; Mathias Uhlén; Jaakko Patrakka; Christer Betsholtz; Karl Tryggvason
Journal:  J Am Soc Nephrol       Date:  2011-09-23       Impact factor: 10.121

6.  Reduction of proteinuria through podocyte alkalinization.

Authors:  Mehmet M Altintas; Kumiko Moriwaki; Changli Wei; Clemens C Möller; Jan Flesche; Jing Li; Suma Yaddanapudi; Mohd Hafeez Faridi; Markus Gödel; Tobias B Huber; Richard A Preston; Jean X Jiang; Dontscho Kerjaschki; Sanja Sever; Jochen Reiser
Journal:  J Biol Chem       Date:  2014-05-09       Impact factor: 5.157

7.  Effects of miR-151-3p-mediated GLCCl1 expression on biological function in children with nephrotic syndrome.

Authors:  Chengliang Xu; Yanping Li
Journal:  Am J Transl Res       Date:  2021-03-15       Impact factor: 4.060

8.  Minimal change nephrotic syndrome associated with immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome.

Authors:  Yuya Hashimura; Kandai Nozu; Hirokazu Kanegane; Toshio Miyawaki; Akira Hayakawa; Norishige Yoshikawa; Koichi Nakanishi; Minoru Takemoto; Kazumoto Iijima; Masafumi Matsuo
Journal:  Pediatr Nephrol       Date:  2009-02-03       Impact factor: 3.714

9.  Systematic analysis of a novel human renal glomerulus-enriched gene expression dataset.

Authors:  Maja T Lindenmeyer; Felix Eichinger; Kontheari Sen; Hans-Joachim Anders; Ilka Edenhofer; Deborah Mattinzoli; Matthias Kretzler; Maria P Rastaldi; Clemens D Cohen
Journal:  PLoS One       Date:  2010-07-12       Impact factor: 3.240

10.  The Prediction of Key Cytoskeleton Components Involved in Glomerular Diseases Based on a Protein-Protein Interaction Network.

Authors:  Fangrui Ding; Aidi Tan; Wenjun Ju; Xuejuan Li; Shao Li; Jie Ding
Journal:  PLoS One       Date:  2016-05-26       Impact factor: 3.240

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