Literature DB >> 18032071

Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life.

T M Porter1, C W Schadt, L Rizvi, A P Martin, S K Schmidt, L Scott-Denton, R Vilgalys, J M Moncalvo.   

Abstract

Fungi are one of the most diverse groups of Eukarya and play essential roles in terrestrial ecosystems as decomposers, pathogens and mutualists. This study unifies disparate reports of unclassified fungal sequences from soils of diverse origins and anchors many of them in a well-supported clade of the Ascomycota equivalent to a subphylum. We refer to this clade as Soil Clone Group I (SCGI). We expand the breadth of environments surveyed and develop a taxon-specific primer to amplify 2.4kbp rDNA fragments directly from soil. Our results also expand the known range of this group from North America to Europe and Australia. The ancient origin of SCGI implies that it may represent an important transitional form among the basal Ascomycota groups. SCGI is unusual because it currently represents the only major fungal lineage known only from sequence data. This is an important contribution towards building a more complete fungal phylogeny and highlights the need for further work to determine the function and biology of SCGI taxa.

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Year:  2007        PMID: 18032071     DOI: 10.1016/j.ympev.2007.10.002

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  24 in total

Review 1.  A glimpse into the basis of vision in the kingdom Mycota.

Authors:  Alexander Idnurm; Surbhi Verma; Luis M Corrochano
Journal:  Fungal Genet Biol       Date:  2010-05-06       Impact factor: 3.495

2.  Firing range soils yield a diverse array of fungal isolates capable of organic acid production and Pb mineral solubilization.

Authors:  Tarah S Sullivan; Neil R Gottel; Nicholas Basta; Philip M Jardine; Christopher W Schadt
Journal:  Appl Environ Microbiol       Date:  2012-06-22       Impact factor: 4.792

3.  Diversity and structure of ectomycorrhizal and co-associated fungal communities in a serpentine soil.

Authors:  Alexander Urban; Markus Puschenreiter; Joseph Strauss; Markus Gorfer
Journal:  Mycorrhiza       Date:  2008-08-03       Impact factor: 3.387

4.  Inherited fungal and bacterial endosymbionts of a parasitic wasp and its cockroach host.

Authors:  Cara M Gibson; Martha S Hunter
Journal:  Microb Ecol       Date:  2008-08-31       Impact factor: 4.552

5.  Soil microbial community responses to multiple experimental climate change drivers.

Authors:  Hector F Castro; Aimée T Classen; Emily E Austin; Richard J Norby; Christopher W Schadt
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

6.  Soil fungal communities respond to grassland plant community richness and soil edaphics.

Authors:  Nicholas LeBlanc; Linda L Kinkel; H Corby Kistler
Journal:  Microb Ecol       Date:  2014-11-18       Impact factor: 4.552

7.  Ligninolytic Activity at 0 °C of Fungi on Oak Leaves Under Snow Cover in a Mixed Forest in Japan.

Authors:  Toshizumi Miyamoto; Keiichi Koda; Arata Kawaguchi; Yasumitsu Uraki
Journal:  Microb Ecol       Date:  2017-02-28       Impact factor: 4.552

8.  Phylogenetic structure of ectomycorrhizal fungal communities of western hemlock changes with forest age and stand type.

Authors:  SeaRa Lim; Mary L Berbee
Journal:  Mycorrhiza       Date:  2013-03-09       Impact factor: 3.387

9.  Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.

Authors:  Neil R Gottel; Hector F Castro; Marilyn Kerley; Zamin Yang; Dale A Pelletier; Mircea Podar; Tatiana Karpinets; Ed Uberbacher; Gerald A Tuskan; Rytas Vilgalys; Mitchel J Doktycz; Christopher W Schadt
Journal:  Appl Environ Microbiol       Date:  2011-07-15       Impact factor: 4.792

10.  Geoglossomycetes cl. nov., Geoglossales ord. nov. and taxa above class rank in the Ascomycota Tree of Life.

Authors:  C L Schoch; Z Wang; J P Townsend; J W Spatafora
Journal:  Persoonia       Date:  2009-06-05       Impact factor: 11.051

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