Literature DB >> 18023728

Mathematical models for somite formation.

Ruth E Baker1, Santiago Schnell, Philip K Maini.   

Abstract

Somitogenesis is the process of division of the anterior-posterior vertebrate embryonic axis into similar morphological units known as somites. These segments generate the prepattern which guides formation of the vertebrae, ribs and other associated features of the body trunk. In this work, we review and discuss a series of mathematical models which account for different stages of somite formation. We begin by presenting current experimental information and mechanisms explaining somite formation, highlighting features which will be included in the models. For each model we outline the mathematical basis, show results of numerical simulations, discuss their successes and shortcomings and avenues for future exploration. We conclude with a brief discussion of the state of modeling in the field and current challenges which need to be overcome in order to further our understanding in this area.

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Year:  2008        PMID: 18023728      PMCID: PMC2754719          DOI: 10.1016/S0070-2153(07)81006-4

Source DB:  PubMed          Journal:  Curr Top Dev Biol        ISSN: 0070-2153            Impact factor:   4.897


  72 in total

Review 1.  A clock-work somite.

Authors:  K J Dale; O Pourquié
Journal:  Bioessays       Date:  2000-01       Impact factor: 4.345

2.  A cell cycle model for somitogenesis: mathematical formulation and numerical simulation.

Authors:  J R Collier; D Mcinerney; S Schnell; P K Maini; D J Gavaghan; P Houston; C D Stern
Journal:  J Theor Biol       Date:  2000-12-07       Impact factor: 2.691

3.  Notch signalling and the synchronization of the somite segmentation clock.

Authors:  Y J Jiang; B L Aerne; L Smithers; C Haddon; D Ish-Horowicz; J Lewis
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

Review 4.  Molecular and cellular biology of avian somite development.

Authors:  F E Stockdale; W Nikovits; B Christ
Journal:  Dev Dyn       Date:  2000-11       Impact factor: 3.780

Review 5.  Vertebrate somitogenesis.

Authors:  O Pourquié
Journal:  Annu Rev Cell Dev Biol       Date:  2001       Impact factor: 13.827

Review 6.  The vertebrate segmentation clock.

Authors:  O Pourquie
Journal:  J Anat       Date:  2001 Jul-Aug       Impact factor: 2.610

7.  Transcriptional regulation of Mesp1 and Mesp2 genes: differential usage of enhancers during development.

Authors:  S Haraguchi; S Kitajima; A Takagi; H Takeda; T Inoue; Y Saga
Journal:  Mech Dev       Date:  2001-10       Impact factor: 1.882

8.  Mesp2 initiates somite segmentation through the Notch signalling pathway.

Authors:  Y Takahashi; K Koizumi; A Takagi; S Kitajima; T Inoue; H Koseki; Y Saga
Journal:  Nat Genet       Date:  2000-08       Impact factor: 38.330

9.  A clock and wavefront model for control of the number of repeated structures during animal morphogenesis.

Authors:  J Cooke; E C Zeeman
Journal:  J Theor Biol       Date:  1976-05-21       Impact factor: 2.691

10.  Onset of neuronal differentiation is regulated by paraxial mesoderm and requires attenuation of FGF signalling.

Authors:  Ruth Diez del Corral; Dorette N Breitkreuz; Kate G Storey
Journal:  Development       Date:  2002-04       Impact factor: 6.868

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  11 in total

1.  Mechanisms and constraints shaping the evolution of body plan segmentation.

Authors:  K H W J Ten Tusscher
Journal:  Eur Phys J E Soft Matter       Date:  2013-05-29       Impact factor: 1.890

2.  How can mathematics help us explore vertebrate segmentation?

Authors:  Ruth E Baker; Santiago Schnell
Journal:  HFSP J       Date:  2009-01-27

3.  Somitogenesis clock-wave initiation requires differential decay and multiple binding sites for clock protein.

Authors:  Mark Campanelli; Tomás Gedeon
Journal:  PLoS Comput Biol       Date:  2010-04-01       Impact factor: 4.475

Review 4.  A multi-cell, multi-scale model of vertebrate segmentation and somite formation.

Authors:  Susan D Hester; Julio M Belmonte; J Scott Gens; Sherry G Clendenon; James A Glazier
Journal:  PLoS Comput Biol       Date:  2011-10-06       Impact factor: 4.475

Review 5.  Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies.

Authors:  Ruth E Baker; Santiago Schnell; Philip K Maini
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

6.  A spatio-temporal model of Notch signalling in the zebrafish segmentation clock: conditions for synchronised oscillatory dynamics.

Authors:  Alan J Terry; Marc Sturrock; J Kim Dale; Miguel Maroto; Mark A J Chaplain
Journal:  PLoS One       Date:  2011-02-28       Impact factor: 3.240

7.  Travelling and splitting of a wave of hedgehog expression involved in spider-head segmentation.

Authors:  Masaki Kanayama; Yasuko Akiyama-Oda; Osamu Nishimura; Hiroshi Tarui; Kiyokazu Agata; Hiroki Oda
Journal:  Nat Commun       Date:  2011-10-11       Impact factor: 14.919

8.  Stochastic Regulation of her1/7 Gene Expression Is the Source of Noise in the Zebrafish Somite Clock Counteracted by Notch Signalling.

Authors:  Robert P Jenkins; Anja Hanisch; Cristian Soza-Ried; Erik Sahai; Julian Lewis
Journal:  PLoS Comput Biol       Date:  2015-11-20       Impact factor: 4.475

Review 9.  Tissue patterning and cellular mechanics.

Authors:  Evan Heller; Elaine Fuchs
Journal:  J Cell Biol       Date:  2015-10-26       Impact factor: 10.539

10.  Computational Model of MicroRNA Control of HIF-VEGF Pathway: Insights into the Pathophysiology of Ischemic Vascular Disease and Cancer.

Authors:  Chen Zhao; Aleksander S Popel
Journal:  PLoS Comput Biol       Date:  2015-11-20       Impact factor: 4.475

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