Literature DB >> 18023120

Genetic suppression.

Jonathan Hodgkin1.   

Abstract

Genetic suppression has provided a very powerful tool for analyzing C. elegans. Suppression experiments are facilitated by the ability to handle very large numbers of individuals and to apply powerful selections. Because the animal grows as a self-fertilizing diploid, both dominant and recessive suppressors can be recovered. Many different kinds of suppression have been reported. These are discussed by category, with examples, together with discussion of how suppressors can be used to interpret the underlying biology, and to enable further experimentation. Suppression phenomena can be divided into intragenic and extragenic classes, depending on whether the suppressor lies in the same gene as the starting mutation, or in a different gene. Intragenic types include same-site replacement, compensatory mutation, alteration in splicing, and reversion of dominant mutations by cis-knockout. Extragenic suppression can occur by a variety of informational mechanisms, such as alterations in splicing, translation or nonsense-mediated decay. In addition, extragenic suppression can occur by bypass, dosage effects, product interaction, or removal of toxic products. Within signaling pathways, suppression can occur by modulating the strength of signal transmission, or by epistatic interactions that can reveal the underlying regulatory hierarchies. In C. elegans biology, the processes of muscle development, vulva formation and sex determination have provided remarkably rich arenas for the investigation and exploitation of suppression.

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Year:  2005        PMID: 18023120      PMCID: PMC4781008          DOI: 10.1895/wormbook.1.59.1

Source DB:  PubMed          Journal:  WormBook        ISSN: 1551-8507


  24 in total

1.  A C. elegans eIF4E-family member upregulates translation at elevated temperatures of mRNAs encoding MSH-5 and other meiotic crossover proteins.

Authors:  Anren Song; Sara Labella; Nadejda L Korneeva; Brett D Keiper; Eric J Aamodt; Monique Zetka; Robert E Rhoads
Journal:  J Cell Sci       Date:  2010-06-08       Impact factor: 5.285

2.  Epigenetic suppression of T-DNA insertion mutants in Arabidopsis.

Authors:  Yangbin Gao; Yunde Zhao
Journal:  Mol Plant       Date:  2012-09-12       Impact factor: 13.164

3.  Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell.

Authors:  Leslie Magtanong; Cheuk Hei Ho; Sarah L Barker; Wei Jiao; Anastasia Baryshnikova; Sondra Bahr; Andrew M Smith; Lawrence E Heisler; John S Choy; Elena Kuzmin; Kerry Andrusiak; Anna Kobylianski; Zhijian Li; Michael Costanzo; Munira A Basrai; Guri Giaever; Corey Nislow; Brenda Andrews; Charles Boone
Journal:  Nat Biotechnol       Date:  2011-05-15       Impact factor: 54.908

Review 4.  From phenologs to silent suppressors: Identifying potential therapeutic targets for human disease.

Authors:  Andy Golden
Journal:  Mol Reprod Dev       Date:  2017-10-03       Impact factor: 2.609

Review 5.  Dissection of genetic pathways in C. elegans.

Authors:  Zheng Wang; David R Sherwood
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

Review 6.  Genetic suppression: Extending our knowledge from lab experiments to natural populations.

Authors:  Takeshi Matsui; Jonathan T Lee; Ian M Ehrenreich
Journal:  Bioessays       Date:  2017-05-04       Impact factor: 4.345

7.  Arabidopsis MAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing.

Authors:  Ana Belén Sánchez-García; Verónica Aguilera; Rosa Micol-Ponce; Sara Jover-Gil; María Rosa Ponce
Journal:  Plant Cell       Date:  2015-07-02       Impact factor: 11.277

Review 8.  Mechanisms of suppression: The wiring of genetic resilience.

Authors:  Jolanda van Leeuwen; Carles Pons; Charles Boone; Brenda J Andrews
Journal:  Bioessays       Date:  2017-06-05       Impact factor: 4.345

9.  Regulation of C. elegans fat uptake and storage by acyl-CoA synthase-3 is dependent on NR5A family nuclear hormone receptor nhr-25.

Authors:  Brendan C Mullaney; Raymond D Blind; George A Lemieux; Carissa L Perez; Ida C Elle; Nils J Faergeman; Marc R Van Gilst; Holly A Ingraham; Kaveh Ashrafi
Journal:  Cell Metab       Date:  2010-10-06       Impact factor: 27.287

10.  Identification of genes that may regulate the expression of the transcription factor production of anthocyanin pigment 1 (PAP1)/MYB75 involved in Arabidopsis anthocyanin biosynthesis.

Authors:  Dong Ho Shin; Misuk Cho; Myoung Goo Choi; Prasanta Kumar Das; Seul-Ki Lee; Sang-Bong Choi; Youn-Il Park
Journal:  Plant Cell Rep       Date:  2015-01-21       Impact factor: 4.570

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