Literature DB >> 18007650

Evolutionary developmental biology and genomics.

Cristian Cañestro1, Hayato Yokoi, John H Postlethwait.   

Abstract

Reciprocal questions often frame studies of the evolution of developmental mechanisms. How can species share similar developmental genetic toolkits but still generate diverse life forms? Conversely, how can similar forms develop from different toolkits? Genomics bridges the gap between evolutionary and developmental biology, and can help answer these evo-devo questions in several ways. First, it informs us about historical relationships, thus orienting the direction of evolutionary diversification. Second, genomics lists all toolkit components, thereby revealing contraction and expansion of the genome and suggesting mechanisms for evolution of both developmental functions and genome architecture. Finally, comparative genomics helps us to identify conserved non-coding elements and their relationship to genome architecture and development.

Entities:  

Mesh:

Year:  2007        PMID: 18007650     DOI: 10.1038/nrg2226

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  31 in total

1.  The epigenome and top-down causation.

Authors:  P C W Davies
Journal:  Interface Focus       Date:  2011-09-14       Impact factor: 3.906

2.  Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae.

Authors:  Ricard Albalat
Journal:  Dev Genes Evol       Date:  2008-09-24       Impact factor: 0.900

3.  Revealing developmental networks by comparative transcriptomics.

Authors:  Tamar Hashimshony; Itai Yanai
Journal:  Transcription       Date:  2010-07-27

4.  How consistent are the transcriptome changes associated with cold acclimation in two species of the Drosophila virilis group?

Authors:  D J Parker; L Vesala; M G Ritchie; A Laiho; A Hoikkala; M Kankare
Journal:  Heredity (Edinb)       Date:  2015-02-11       Impact factor: 3.821

5.  Coelimination and Survival in Gene Network Evolution: Dismantling the RA-Signaling in a Chordate.

Authors:  Josep Martí-Solans; Olga V Belyaeva; Nuria P Torres-Aguila; Natalia Y Kedishvili; Ricard Albalat; Cristian Cañestro
Journal:  Mol Biol Evol       Date:  2016-07-12       Impact factor: 16.240

Review 6.  Evolution by gene loss.

Authors:  Ricard Albalat; Cristian Cañestro
Journal:  Nat Rev Genet       Date:  2016-04-18       Impact factor: 53.242

7.  Structural shifts of aldehyde dehydrogenase enzymes were instrumental for the early evolution of retinoid-dependent axial patterning in metazoans.

Authors:  Tiago J P Sobreira; Ferdinand Marlétaz; Marcos Simões-Costa; Deborah Schechtman; Alexandre C Pereira; Frédéric Brunet; Sarah Sweeney; Ariel Pani; Jochanan Aronowicz; Christopher J Lowe; Bradley Davidson; Vincent Laudet; Marianne Bronner; Paulo S L de Oliveira; Michael Schubert; José Xavier-Neto
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-17       Impact factor: 11.205

8.  Tunicates push the limits of animal evo-devo.

Authors:  David E K Ferrier
Journal:  BMC Biol       Date:  2011-01-20       Impact factor: 7.431

9.  Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.

Authors:  Cristian Cañestro; Julian M Catchen; Adriana Rodríguez-Marí; Hayato Yokoi; John H Postlethwait
Journal:  PLoS Genet       Date:  2009-05-29       Impact factor: 5.917

10.  Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.

Authors:  Tiratha Raj Singh; Georgia Tsagkogeorga; Frédéric Delsuc; Samuel Blanquart; Noa Shenkar; Yossi Loya; Emmanuel Jp Douzery; Dorothée Huchon
Journal:  BMC Genomics       Date:  2009-11-17       Impact factor: 3.969

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