Literature DB >> 18003601

Evidence excluding the root of the tree of life from the actinobacteria.

Jacqueline A Servin, Craig W Herbold, Ryan G Skophammer, James A Lake.   

Abstract

The Actinobacteria are found in aquatic and terrestrial habitats throughout the world and are among the most morphologically varied prokaryotes. They manufacture unusual compounds, utilize novel metabolic pathways, and contain unique genes. This diversity may suggest that the root of the tree of life could be within the Actinobacteria, although there is little or no convincing evidence for such a root. Here, using gene insertions and deletions found in the DNA gyrase, GyrA, and in the paralogous DNA topoisomerase, ParC, we present evidence that the root of life is outside the Actinobacteria.

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Year:  2007        PMID: 18003601     DOI: 10.1093/molbev/msm249

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  13 in total

1.  Evidence for an early prokaryotic endosymbiosis.

Authors:  James A Lake
Journal:  Nature       Date:  2009-08-20       Impact factor: 49.962

2.  Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution.

Authors:  Thomas Cavalier-Smith
Journal:  Biol Direct       Date:  2010-02-04       Impact factor: 4.540

Review 3.  The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life.

Authors:  Thomas Cavalier-Smith
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-09-02       Impact factor: 10.005

Review 4.  Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).

Authors:  Thomas Cavalier-Smith; Ema E-Yung Chao
Journal:  Protoplasma       Date:  2020-01-03       Impact factor: 3.356

Review 5.  Genome beginnings: rooting the tree of life.

Authors:  James A Lake; Ryan G Skophammer; Craig W Herbold; Jacqueline A Servin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-08-12       Impact factor: 6.237

6.  Reassessment of the lineage fusion hypothesis for the origin of double membrane bacteria.

Authors:  Kristen S Swithers; Gregory P Fournier; Anna G Green; J Peter Gogarten; Pascal Lapierre
Journal:  PLoS One       Date:  2011-08-18       Impact factor: 3.240

7.  Genome sequencing and description of Oerskovia enterophila VJag, an agar- and cellulose-degrading bacterium.

Authors:  Vanessa Jag; Anja Poehlein; Frank R Bengelsdorf; Rolf Daniel; Peter Dürre
Journal:  Stand Genomic Sci       Date:  2017-05-04

8.  Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life.

Authors:  Ruben E Valas; Philip E Bourne
Journal:  Biol Direct       Date:  2009-08-25       Impact factor: 4.540

9.  The deep roots of the rings of life.

Authors:  James A Lake; Janet S Sinsheimer
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

10.  Planktonic and sedimentary bacterial diversity of Lake Sayram in summer.

Authors:  Lei Fang; Lei Chen; Yuan Liu; Wei Tao; Zhongzhe Zhang; Haiying Liu; Yong Tang
Journal:  Microbiologyopen       Date:  2015-08-03       Impact factor: 3.139

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