Literature DB >> 17992470

Compressing a rigid filament: buckling and cyclization.

N-K Lee1, A Johner, S-C Hong.   

Abstract

We study elastic properties of rigid filaments modeled as stiff chains shorter than their persistence length. By rigid filaments we mean that fluctuations around the optimal filament shape are weak and that low-order expansions (quadratic or quartic) in the deviation from the optimal shape are sufficient to describe them. Our main interest lies in the profiles of force vs. projected filament length, closure probability and weakly buckled states. Results may be relevant to experiments on self-assembled biological (microtubules, actin filaments) and synthetic (organo-gelators) filaments, carbon nanotubes and polymers grafted with strongly repelling side chains, some of which are discussed here.

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Year:  2007        PMID: 17992470     DOI: 10.1140/epje/i2007-10230-4

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  29 in total

1.  Reversible unfolding of single RNA molecules by mechanical force.

Authors:  J Liphardt; B Onoa; S B Smith; I Tinoco; C Bustamante
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Force-Extension Relation and Plateau Modulus for Wormlike Chains.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-07-08       Impact factor: 9.161

3.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

4.  Pulling-speed-dependent force-extension profiles for semiflexible chains.

Authors:  Nam-Kyung Lee; D Thirumalai
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

5.  Scaling of microtubule force-velocity curves obtained at different tubulin concentrations.

Authors:  Marcel E Janson; Marileen Dogterom
Journal:  Phys Rev Lett       Date:  2004-06-16       Impact factor: 9.161

6.  Extracting DNA twist rigidity from experimental supercoiling data.

Authors:  Sébastien Neukirch
Journal:  Phys Rev Lett       Date:  2004-11-05       Impact factor: 9.161

7.  Cyclization of short DNA fragments and bending fluctuations of the double helix.

Authors:  Quan Du; Chaim Smith; Nahum Shiffeldrim; Maria Vologodskaia; Alexander Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

8.  Buckling of lipid tubules in shrinking liquid droplets.

Authors:  Yue Zhao; Linan An; Jiyu Fang
Journal:  Nano Lett       Date:  2007-04-17       Impact factor: 11.189

9.  Behavior of supercoiled DNA.

Authors:  T R Strick; J F Allemand; D Bensimon; V Croquette
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

10.  Specific binding of chromosomal protein HMG1 to DNA damaged by the anticancer drug cisplatin.

Authors:  P M Pil; S J Lippard
Journal:  Science       Date:  1992-04-10       Impact factor: 47.728

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  3 in total

1.  DNA triplex folding: moderate versus high salt conditions.

Authors:  Nam-Kyung Lee; Albert Johner; Il-Buem Lee; Seok-Cheol Hong
Journal:  Eur Phys J E Soft Matter       Date:  2013-06-10       Impact factor: 1.890

2.  Balance of microtubule stiffness and cortical tension determines the size of blood cells with marginal band across species.

Authors:  Serge Dmitrieff; Adolfo Alsina; Aastha Mathur; François J Nédélec
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-11       Impact factor: 11.205

3.  Kinetics of the triplex-duplex transition in DNA.

Authors:  Il-Buem Lee; Seok-Cheol Hong; Nam-Kyung Lee; Albert Johner
Journal:  Biophys J       Date:  2012-12-18       Impact factor: 4.033

  3 in total

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